bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0640_orf2 Length=296 Score E Sequences producing significant alignments: (Bits) Value 5833.PF13_0124 139 2e-31 > 5833.PF13_0124 Length=259 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 123/234 (52%), Gaps = 40/234 (17%) Query 98 GSMKAPPRSQEPNGLLQSGLSAVKDGA-------------SRVLDGASSVVNATRAT--- 141 GSM R++E GL+Q + K GA + + DGAS V N+T A Sbjct 25 GSMDNN-RNEEEKGLIQKAIDLSKKGAETLQKGLKETLGKNNMNDGASMVSNSTTAESGS 83 Query 142 -IADNPL----------------------SSQNMLMFGVVAAVGVLFMFLAFLTLPLLVF 178 ++ PL S +N +F ++ + VLFM L+F TLP++V Sbjct 84 MFSNFPLFNNNNQNRENETSSFFAFTTLVSYKNFPLFCILFGISVLFMILSFFTLPMIVI 143 Query 179 APSKFALLFTMGSLCFLSALALLRGVVALFRHLVEPTRLPFTAVYFSSLFLTLYATLVAK 238 P +F FT+ S+CF+S+LA L+G L+ HL+E RLPFT Y SL TLY TL+ Sbjct 144 TPRQFGFFFTVSSICFVSSLAFLKGFSNLYHHLMEKQRLPFTTAYILSLLSTLYFTLINP 203 Query 239 SYVLTLVFSVLQLCGLASFLVSYIPGGSHMLKFMGQAAWQVLRKAFKCGGSRDL 292 Y+L L+ SV+Q+ L SFLVSYIPGG+ +K + A + ++ F+ + DL Sbjct 204 LYLLALITSVIQMLALISFLVSYIPGGAGAIKMLINAIYSYVKNLFRRSNTSDL 257 Lambda K H 0.322 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 101413109161 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40