bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0593_orf6 Length=97 Score E Sequences producing significant alignments: (Bits) Value 5671.LinJ23.0060 110 9e-24 > 5671.LinJ23.0060 Length=296 Score = 110 bits (276), Expect = 9e-24, Method: Composition-based stats. Identities = 53/89 (59%), Positives = 67/89 (75%), Gaps = 4/89 (4%) Query 13 PRVFMDIRVGDKPAKRLVIALYQDTVPRTVENFRSLCVGDK-KGENGEPLTFKKNTFHRI 71 P+VF DI + +K A R+V+ LY DTVP+TVENFR+LC G+K KG +G+PL +K + FHR+ Sbjct 24 PKVFFDISIDNKAAGRMVMELYADTVPKTVENFRALCTGEKGKGRSGKPLHYKNSVFHRV 83 Query 72 IKNFMMQGGDI---NGKGGESIYGPQFND 97 I NFM+QGGD NG GGESIYG F D Sbjct 84 IPNFMIQGGDFTRGNGTGGESIYGTTFRD 112 Lambda K H 0.320 0.142 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22472223870 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40