bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0548_orf3 Length=165 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd8_3430 221 5e-57 > 5807.cgd8_3430 Length=936 Score = 221 bits (564), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 102/165 (61%), Positives = 122/165 (73%), Gaps = 0/165 (0%) Query 1 SNGNKTEEGPVQDSPDRHFVVFTDPHPKPSYLFAILAGDFAAIVDTFTTKSGKEVALAVY 60 SNGN E+G VQ S +RHF +F DP PKP YLFA++AG + D F TKSGK V L VY Sbjct 194 SNGNLLEKGDVQGSENRHFAIFVDPFPKPCYLFAVVAGVLGRLEDKFITKSGKTVRLFVY 253 Query 61 SEPEQMHKLNWAMHSVKVSMKWEEDHFGREYDLDTFNVACVSDFNAGAMENKGLNIFNCS 120 SEP+ + +L AM S+K++MKW+ED FG EYDL+ FN+ V FN GAMENK LNIFNCS Sbjct 254 SEPKYVDRLRLAMESLKLAMKWDEDRFGLEYDLEIFNIVAVESFNFGAMENKSLNIFNCS 313 Query 121 LLLASMQTSTDDDFERVLAVVGHEYFHNWTGNRVTVRDWFQLTLK 165 LLAS + D F +L++VGHEYFHN+TGNRVT RDWFQLTLK Sbjct 314 CLLASENITPDYFFTNILSIVGHEYFHNYTGNRVTCRDWFQLTLK 358 Lambda K H 0.319 0.133 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 29254071491 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40