bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0515_orf2 Length=336 Score E Sequences producing significant alignments: (Bits) Value 5833.PFL0510c 94.0 6e-18 > 5833.PFL0510c Length=1000 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 3/98 (3%) Query 60 TKLCSRYLSKGYC-RKRDCTFAHSVEELRPTPDLRCTKWCRFVFFGLECNDARCPYAHSQ 118 TK+C +K YC + C +AHS+EEL+P PDLR TK C FV + C D C +AH Sbjct 27 TKMCPFQKNKNYCLNESSCHYAHSIEELKPMPDLRNTKLCDFVKKKIPCRDINCTFAHDI 86 Query 119 EELQP--QPPEFKTTLCRFAKRGKCLNGDNCRFLHPHE 154 + L+P +K+T+C F +GKC NG+ CRF H +E Sbjct 87 DTLKPSVHLATYKSTICSFWGKGKCFNGNKCRFAHGNE 124 Lambda K H 0.318 0.132 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 124299612944 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40