bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0463_orf1 Length=91 Score E Sequences producing significant alignments: (Bits) Value 351627.Csac_2055 143 2e-33 > 351627.Csac_2055 Length=864 Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 65/91 (71%), Positives = 78/91 (85%), Gaps = 0/91 (0%) Query 1 RAGLNLKNKPLGTFMFLGSSGVGKTELAKAVAEEMFDSEKNLIRLDMVEYQEAHSISRLI 60 RAG+ KP+GTF+FLG +GVGKTELA+A+AE +FDSE N+IR+DM EY E HS+SRLI Sbjct 593 RAGIKDPRKPIGTFLFLGPTGVGKTELARALAEALFDSENNMIRIDMTEYMEKHSVSRLI 652 Query 61 GPPPGYMGNDEGGQLTEAVRQKPHSVVLFDE 91 G PPGY+G +EGGQLTEAVR KP+SVVLFDE Sbjct 653 GAPPGYVGYEEGGQLTEAVRTKPYSVVLFDE 683 Lambda K H 0.314 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22919213550 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40