bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0446_orf3 Length=216 Score E Sequences producing significant alignments: (Bits) Value 7165.AGAP004028-PA 180 2e-44 > 7165.AGAP004028-PA Length=1212 Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 78/140 (55%), Positives = 107/140 (76%), Gaps = 1/140 (0%) Query 78 FPFTSFFSDAPQPLFPGEAAA-DAAVAESCFRYMDQMQQQLQDYRAFELLRTAGDRADFL 136 FPF FF DAPQPLF G A + +A SCFRY+ M +L+++RAFELLR+ DR+ +L Sbjct 699 FPFARFFRDAPQPLFGGATYAENMDIARSCFRYVSHMFAELEEFRAFELLRSGLDRSKYL 758 Query 137 LTTHARMVAMTCTHAAITRERLVELNFTFDSLIIEEAAQILEVETFIPMLLQKAADKATR 196 L A+++AMTCTHAA+ R+ LV + F +D++++EEAAQILE+ETFIP+LLQ D R Sbjct 759 LVKEAKIIAMTCTHAALKRKELVTMGFKYDNILMEEAAQILEIETFIPLLLQNPMDGYNR 818 Query 197 LKRVVLLGDHHQLPPIVKHM 216 LKR +++GDHHQLPP++K+M Sbjct 819 LKRWIMIGDHHQLPPVIKNM 838 Lambda K H 0.317 0.129 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 56730992589 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40