bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0438_orf1 Length=229 Score E Sequences producing significant alignments: (Bits) Value 3702.AT4G34280.1 105 1e-21 > 3702.AT4G34280.1 Length=783 Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 2/117 (1%) Query 104 FEDLSSVSVNSTDDYLLVSGRSADLTIHDVATGARLGTLSGLHSDSINIVRFAHSSPHLF 163 F+ L+SV NSTD L SG S D+ ++D+ G RL + +H + IN+V+F++ SP LF Sbjct 540 FDQLTSVHANSTDQLFLASGYSKDVALYDIGRGTRLQVFANMHQEHINVVKFSNHSPFLF 599 Query 164 VTASFDQTCRLWDLRQRINGHQPLLTVDTGSLSVMCCFDDSDEWLLCSGVDAALRQV 220 T+SFD+ +LWDLRQ +P T + +VM CF D +LL S VD +RQ+ Sbjct 600 ATSSFDKDVKLWDLRQE--PSRPCYTASSTKGNVMVCFSPDDRYLLASAVDNEVRQL 654 Lambda K H 0.319 0.132 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 63790376685 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40