bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0371_orf2 Length=146 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd2_4270 96.3 2e-19 > 5807.cgd2_4270 Length=1257 Score = 96.3 bits (238), Expect = 2e-19, Method: Composition-based stats. Identities = 45/103 (43%), Positives = 58/103 (56%), Gaps = 0/103 (0%) Query 42 GLPGFAGVDLSQETGAFAVSVGCGYFNDPKGLPGLAHALEHAVFLGSALQPELKGWDEFL 101 GL D + AF+ +GCGY+ DP L GLAH +EH VFLGS P GWDEFL Sbjct 101 GLKTLLVSDNTMLESAFSFGIGCGYYQDPDNLAGLAHLMEHVVFLGSQENPNPVGWDEFL 160 Query 102 SSRGGIHNAHTKPHITTFYVSAPSRHLPELFNVFLDHLSSPLL 144 +GG NA+T T FYV +P R L + + F L +P++ Sbjct 161 LKKGGAANAYTSADTTIFYVLSPPRELESVMSYFTKMLVNPVI 203 Lambda K H 0.318 0.140 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22393349475 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40