bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0276_orf2 Length=124 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0323 84.0 1e-15 > 5833.PF14_0323 Length=149 Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 8/125 (6%) Query 7 GDGELTASEALLAIRSTGLIVSADEASSL--------PATMQWEQFESWVSKKLSSSNPE 58 GDG +T E +RS G + E + T+ + +F + +++KL ++ E Sbjct 24 GDGTITTKELGTVMRSLGQNPTEAELQDMINEIDTDGNGTIDFPEFLTLMARKLKDTDTE 83 Query 59 ADLIKSFKVFDTKGDGTLSTDELMQVIKTLGDLLTDEEVERMVNDADPSKTGRIKYADFV 118 +LI++F+VFD GDG +S DEL V+ LG+ LT+EEV+ M+ +AD G+I Y +FV Sbjct 84 EELIEAFRVFDRDGDGYISADELRHVMTNLGEKLTNEEVDEMIREADIDGDGQINYEEFV 143 Query 119 KLLLS 123 K++++ Sbjct 144 KMMIA 148 Lambda K H 0.309 0.126 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22752691665 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40