bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0261_orf1 Length=236 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd2_3860 199 5e-50 > 5807.cgd2_3860 Length=524 Score = 199 bits (507), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 104/223 (46%), Positives = 143/223 (64%), Gaps = 10/223 (4%) Query 1 NKLVSRHIRVPLNEMPKPSGRCKQHTGEEYEAFCTLCHTPVCRMCRPNHFHADATGRATS 60 NKLV+RHIR+P+N+MP+ SG C HT + E FCTLCH P+CR+CRP+H HAD Sbjct 297 NKLVTRHIRIPINQMPRNSGNCPVHTMDSLEEFCTLCHVPMCRLCRPSHTHAD------- 349 Query 61 RSSPGGCTLIPLSLAYSGTLEKGRQPHLILEKRRTELTQKLEALQSLIDGARCNCRSVEQ 120 +P ++P+S AY LE+ +PH L R+ EL +KLE+ Q + + R N VEQ Sbjct 350 EKTPS--MIMPISRAYRAQLERHNKPHPCLNSRKMELLEKLESQQLIFNDVRANMFEVEQ 407 Query 121 RCYSILEESMNQLKGCTEDKMGIVLSQQFELQRQLDMIEWSENFLRLQRSVLPPADYLAS 180 R YSILE S+ QL+ TE KM +L +Q L + L +EWSE FL+ +S+LPPAD+L + Sbjct 408 RIYSILESSITQLQIATESKMNKILCEQLILNQLLQQVEWSEGFLQYLQSILPPADFLFA 467 Query 181 WLRHCRIRDEIETLGGDLTDLSRMVVPNMRLDGVVEFLTETAL 223 WL+HC R+E+ L LT + P+ RL G V+ L+E+AL Sbjct 468 WLKHCHYREEVFQLCDILTS-NEQFFPDSRLVGRVDILSESAL 509 Lambda K H 0.321 0.135 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 68043068464 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40