bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0255_orf1 Length=238 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0477 357 1e-97 > 5833.PF14_0477 Length=500 Score = 357 bits (917), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 157/232 (67%), Positives = 201/232 (86%), Gaps = 0/232 (0%) Query 7 RGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKARI 66 +G NV++FVGLQGSGKTTTCTKYA YYQ+KG++TALVCADTFRAGAFDQLKQNA K +I Sbjct 98 KGKRNVILFVGLQGSGKTTTCTKYAHYYQKKGFKTALVCADTFRAGAFDQLKQNAAKVKI 157 Query 67 PFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDI 126 PF+GSY+E DPVKIA +GV F ++YDLIIVD+SGRH+QE LFEEM QV +++ P++I Sbjct 158 PFYGSYSEVDPVKIATDGVNAFLKDKYDLIIVDSSGRHKQENELFEEMIQVENSIQPEEI 217 Query 127 VFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGE 186 +FV+DSHIGQ+C++QA AF +SV +GS+I+TK+DGHAKGGGALSAVAATG PI F+G+GE Sbjct 218 IFVIDSHIGQSCHDQAMAFKNSVSLGSIIITKIDGHAKGGGALSAVAATGCPITFIGTGE 277 Query 187 HFDDFDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKFT 238 H +DF+ F+A SFVSRLLGLGD+ LV+++KEVI +KQ +++ R++KGKF Sbjct 278 HVNDFEKFEAKSFVSRLLGLGDISGLVSTIKEVIDIDKQPELMNRLSKGKFV 329 Lambda K H 0.319 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 69258123258 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40