bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0224_orf1 Length=132 Score E Sequences producing significant alignments: (Bits) Value 5833.PFE0285c 127 8e-29 > 5833.PFE0285c Length=100 Score = 127 bits (320), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 57/78 (73%), Positives = 69/78 (88%), Gaps = 0/78 (0%) Query 55 NAEKEHMQLKVRSPDGSEVYFKIKRRTKLEKLMTAYCNRLGQSIDSVRFLYDGERVKPEK 114 N + EH+Q+KVRSPDG+EV+FKIKR+TKLEKLM YCNRLGQS+++VRFLYDG+R+ + Sbjct 17 NNQGEHIQVKVRSPDGAEVFFKIKRKTKLEKLMEVYCNRLGQSMEAVRFLYDGDRIHGDN 76 Query 115 TPMDLGIEDGDVIDAMVQ 132 TP LGIEDGDVIDAMVQ Sbjct 77 TPEQLGIEDGDVIDAMVQ 94 Lambda K H 0.320 0.139 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22851147482 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40