bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0178_orf1 Length=173 Score E Sequences producing significant alignments: (Bits) Value 5833.PFF1185w 197 8e-50 > 5833.PFF1185w Length=2719 Score = 197 bits (502), Expect = 8e-50, Method: Composition-based stats. Identities = 101/195 (51%), Positives = 126/195 (64%), Gaps = 29/195 (14%) Query 1 PHWQCIVLDEAHRIKNASGAIRHSLDRVQGNMRLLLTGTPLQNNAQELFTLINFLMPDVF 60 P WQCIVLDEAHRIKN SGAIRHS+DRV GNMRLLLTGTPLQNN+ ELFTLINF+ PD+F Sbjct 459 PKWQCIVLDEAHRIKNQSGAIRHSMDRVVGNMRLLLTGTPLQNNSAELFTLINFMFPDIF 518 Query 61 RDSLVIEQAFAQNAKSAAGKSGGKQPRGRSKAAA-------------------------- 94 ++S +IEQAF +++ KS Sbjct 519 KNSEIIEQAFMNASQNNKNKSNNNNNNNNKDEKNNNNDDDDDGGGGGGGANTSGNNTSKV 578 Query 95 ---LAEMDVDTMFKQEDLNKIRQLLDRVMLRRLKEQAIALPRKVFHDIWLPISDLSAKWY 151 + +D+ + K+EDL IR LLD++MLRRLKEQAI LP+K+FHD+WLP+ LSA WY Sbjct 579 NVNIGNIDLKSAIKEEDLKSIRCLLDKIMLRRLKEQAITLPKKIFHDVWLPLGTLSAHWY 638 Query 152 RRLLEIKSLQEEARS 166 +RLL+I+S+ EE S Sbjct 639 KRLLDIRSMVEEKVS 653 Lambda K H 0.321 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 33476963958 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40