bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0077_orf1 Length=189 Score E Sequences producing significant alignments: (Bits) Value 5833.PF08_0034 296 3e-79 > 5833.PF08_0034 Length=1484 Score = 296 bits (757), Expect = 3e-79, Method: Composition-based stats. Identities = 135/208 (64%), Positives = 161/208 (77%), Gaps = 20/208 (9%) Query 2 LVAAKNIFSRQLPKMPREYIVRLVFDRNHYTFCLIKQQQIIGGCCFRPYFKQKFAEVAFL 61 L+ KNIFSRQLPKMPREYIVRLVFDRNHYTFCL+K+ +IGG CFRPYF+QKFAE+AFL Sbjct 1147 LITLKNIFSRQLPKMPREYIVRLVFDRNHYTFCLLKKNTVIGGVCFRPYFEQKFAEIAFL 1206 Query 62 AVTSAEQVKGYGTRLMNHLKEHVKKSGIEYFLTYA--------------------DNFAV 101 AVTS EQVKGYGTRLMNHLKEHVKK GIEYFLTYA NFA+ Sbjct 1207 AVTSTEQVKGYGTRLMNHLKEHVKKFGIEYFLTYAGMYIKWNITMYVCIYIYIYIYNFAI 1266 Query 102 GYFRKQGFTQKISMPKERWFGFIKDYEGGTLMECRISPKVDYLRLFAILNDQQEAVQRAI 161 GYFRKQGF+QKISMPKERWFG+IKDY+GGTLMEC I P ++YLRL +L +Q++AV++AI Sbjct 1267 GYFRKQGFSQKISMPKERWFGYIKDYDGGTLMECYIFPNINYLRLSEMLYEQKKAVKKAI 1326 Query 162 LRLKPPRVFPGLTCWQEDPTRVLHPSEV 189 +KP ++ G+ + ++ LHPS + Sbjct 1327 HFIKPQVIYKGINYFADNKGAALHPSTI 1354 Lambda K H 0.327 0.142 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 41818451300 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40