bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0008_orf1 Length=199 Score E Sequences producing significant alignments: (Bits) Value 386656.YPDSF_2281 149 6e-35 > 386656.YPDSF_2281 Length=871 Score = 149 bits (375), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 81/179 (45%), Positives = 110/179 (61%), Gaps = 21/179 (11%) Query 21 RPGEKFRDEYKPSDFAVDSVDLDFFLEETNTKVIATIIMQRTIGTSPTDLVLNGEELDLV 80 +P K+R +Y+ D+ + +DLDF L+ T V A ++R GT T L+LNGE+L L+ Sbjct 4 QPQAKYRHDYRAPDYTITDIDLDFALDAQKTTVTAVSKVKRQ-GTDVTPLILNGEDLTLI 62 Query 81 SLTLNGKKISDSGNPNAMADGEEGYRLGSDGSLIISKAVLPKEAGESFTLQTQVDIHPKA 140 S++++G+ YR D +L+I + LP + FTL DIHP Sbjct 63 SVSVDGQ-------------AWPHYR-QQDNTLVIEQ--LPAD----FTLTIVNDIHPAT 102 Query 141 NLKLRGLYASGSALVTQCEAEGFRRITYFLDRPDVLAKYTVRLEANKEKYPVLLSNGNK 199 N L GLY SG AL TQCEAEGFR ITY+LDRPDVLA++T R+ A+K +YP LLSNGN+ Sbjct 103 NSALEGLYLSGEALCTQCEAEGFRHITYYLDRPDVLARFTTRIVADKSRYPYLLSNGNR 161 Lambda K H 0.313 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 47162034073 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40