bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0001_orf1 Length=109 Score E Sequences producing significant alignments: (Bits) Value 3702.AT4G35410.2 125 3e-28 > 3702.AT4G35410.2 Length=162 Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 57/97 (58%), Positives = 76/97 (78%), Gaps = 1/97 (1%) Query 13 SSSNNKERNILIKEAAAKVLQRNARQCNVVEWKGDTKLVYKRYASLYFIGCVCNKENPLF 72 S KER+ +I+E + +L R + CN VEW+G K+VYKRYASLYF C+ ++N L Sbjct 21 SPYAQKERSKVIRELSGVILNRGPKLCNFVEWRG-YKVVYKRYASLYFCMCIDQEDNELE 79 Query 73 ILELIHHYVEVLDKYFGNVCELDLIFNFHKAHFLLDE 109 +LE+IHHYVE+LD+YFG+VCELDLIFNFHKA+++LDE Sbjct 80 VLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDE 116 Lambda K H 0.320 0.133 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22374500883 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40