bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
164,496 sequences; 82,071,388 total letters
Query= Eace_2270_orf1
Length=144
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_036540 RRM domain-containing protein ; K12898 heter... 159 3e-39
cpv:cgd1_350 CG8205/fusilli (animal)- like, 2x RRM domains, in... 82.0 6e-16
hsa:80004 ESRP2, FLJ21918, FLJ22248, RBM35B; epithelial splici... 70.5 2e-12
mmu:77411 Esrp2, 9530027K23Rik, Rbm35b; epithelial splicing re... 68.2 8e-12
mmu:207920 Esrp1, 2210008M09Rik, A630065D16, BC031468, MGC2580... 67.0 2e-11
hsa:54845 ESRP1, FLJ20171, RBM35A, RMB35A; epithelial splicing... 66.2 3e-11
mmu:98758 Hnrnpf, 4833420I20Rik, AA407306, Hnrpf, MGC101981, M... 63.2 3e-10
dre:321556 hnrnph1l, fb19a06, wu:fb19a06, zgc:55399, zgc:85960... 62.0 6e-10
hsa:3185 HNRNPF, HNRPF, MGC110997, OK/SW-cl.23, mcs94-1; heter... 62.0 6e-10
xla:379211 esrp1, MGC53361, rbm35a; epithelial splicing regula... 61.2 1e-09
mmu:56258 Hnrnph2, DXHXS1271E, Ftp-3, Ftp3, H', HNRNP, Hnrph2;... 61.2 1e-09
dre:572992 esrp2, FLJ20171, MGC55721, MGC77254, cb404, fa07a06... 61.2 1e-09
mmu:59013 Hnrnph1, AI642080, E430005G16Rik, Hnrnph, Hnrph1; he... 61.2 1e-09
hsa:3187 HNRNPH1, DKFZp686A15170, HNRPH, HNRPH1, hnRNPH; heter... 61.2 1e-09
dre:560190 esrp1, rbm35a, wu:fi28a07, zgc:154050; epithelial s... 60.8 1e-09
dre:402984 hnrnph1, MGC77712, zgc:77712; heterogeneous nuclear... 60.5 2e-09
hsa:3188 HNRNPH2, FTP3, HNRPH', HNRPH2, hnRNPH'; heterogeneous... 59.7 3e-09
xla:100158276 grsf1; G-rich RNA sequence binding factor 1 59.7
xla:432071 hnrnph1-a, MGC78776, hnrnph, hnrnph2, hnrph, hnrph1... 58.5 7e-09
cel:ZK1067.6 sym-2; SYnthetic lethal with Mec family member (s... 57.4 1e-08
hsa:2926 GRSF1, FLJ13125; G-rich RNA sequence binding factor 1 55.8
xla:446758 hnrnph1-b, MGC130700, MGC80081, hnrnph, hnrnph1, hn... 55.5 5e-08
mmu:231413 Grsf1, B130010H02, BB232551, C80280, D5Wsu31e; G-ri... 54.7 1e-07
xla:494658 hnrnph3, hnrph3; heterogeneous nuclear ribonucleopr... 54.3 1e-07
dre:563249 grsf1, MGC153305, wu:fb62c04, zgc:153305; G-rich RN... 52.8 4e-07
ath:AT5G66010 RNA binding / nucleic acid binding / nucleotide ... 52.8 4e-07
ath:AT3G20890 RNA binding / nucleic acid binding / nucleotide ... 52.4 5e-07
cel:Y73B6BL.33 hypothetical protein; K12898 heterogeneous nucl... 47.4 2e-05
mmu:432467 Hnrnph3, AA693301, AI666703, Hnrph3; heterogeneous ... 46.6 3e-05
hsa:3189 HNRNPH3, 2H9, FLJ34092, HNRPH3; heterogeneous nuclear... 46.6 3e-05
pfa:PF10_0235 RNA binding protein, putative 45.4 5e-05
dre:387255 rbm19, npo; RNA binding motif protein 19; K14787 mu... 41.2 0.001
dre:445379 rbm12, zgc:193560, zgc:193570; RNA binding motif pr... 41.2 0.001
xla:379184 MGC132368; hypothetical protein MGC53694 40.8 0.001
hsa:10137 RBM12, HRIHFB2091, KIAA0765, SWAN; RNA binding motif... 40.4 0.002
mmu:75710 Rbm12, 5730420G12Rik, 9430070C08Rik, AI852903, MGC30... 40.0 0.003
mmu:77604 C430048L16Rik, AV299215, MGC91091, Rbm12bb; RIKEN cD... 37.7 0.013
mmu:72397 Rbm12b, 3000004N20Rik, Rbm12ba; RNA binding motif pr... 37.4 0.014
bbo:BBOV_III001020 17.m07117; hypothetical protein 37.0 0.023
hsa:389677 RBM12B, MGC:33837; RNA binding motif protein 12B 37.0 0.024
xla:494769 rbm19; RNA binding motif protein 19; K14787 multipl... 35.4 0.055
xla:379683 rbm12, MGC68861, SWAN; RNA binding motif protein 12 35.0
cel:T23F6.4 rbd-1; RBD (RNA binding domain) protein family mem... 34.7 0.12
ath:AT5G08695 nucleic acid binding / nucleotide binding 34.3 0.12
tpv:TP03_0737 hypothetical protein 34.3 0.12
cpv:cgd1_3530 Gbp1/Gbp2p-like single stranded G-strand telomer... 33.9 0.17
ath:AT5G53680 RNA recognition motif (RRM)-containing protein 33.9 0.20
dre:558581 sart3, si:ch211-191d15.4, wu:fc51h03; squamous cell... 33.1 0.34
xla:398766 rbm12b, MGC68792; RNA binding motif protein 12B 32.7 0.35
mmu:17975 Ncl, B530004O11Rik, C23, D0Nds28, D1Nds28, Nucl; nuc... 32.3 0.52
> tgo:TGME49_036540 RRM domain-containing protein ; K12898 heterogeneous
nuclear ribonucleoprotein F/H
Length=513
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 106/145 (73%), Gaps = 4/145 (2%)
Query 3 KRVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMS--SG 60
KR TGEAYV + +R+ A++ LHGR++G RWIEVFR+S E+F++A RR VM+ SG
Sbjct 91 KRTTGEAYVQLPDPGLREQAIKDLHGRLLGTRWIEVFRASEEEFQKADDRRKTVMAAISG 150
Query 61 TKDGRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQ-EHGFDIGLDSVVLGVAVDGRMNG 119
D DA + +NL V+KLRGLPW+C++N++V FF+ E GFDI D VVLGV DGR++G
Sbjct 151 NTDSLDASRR-MNLNVVKLRGLPWSCSENEIVRFFKAEGGFDIHSDDVVLGVTGDGRLSG 209
Query 120 IAYVELTDAATADAAKEKLHRKYLG 144
IA+VEL A+ A+E LH+KY+G
Sbjct 210 IAFVELPSPDVAEKAREVLHKKYMG 234
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query 68 DVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIG--LDSVVLGVAVDGRMNGIAYVEL 125
D + VL+LRGLP++ + +V FF HGF + L S + +DGR +G AYV+
Sbjct 407 DTANWSAQVLRLRGLPYSANEQHIVQFF--HGFHMAAILPST---IPIDGRPSGEAYVQF 461
Query 126 TDAATA 131
DAA A
Sbjct 462 VDAAEA 467
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAK 135
V++LRGLPW + +V+ FF+ + D+V++ + D R G AYV+L D + A
Sbjct 53 VVRLRGLPWDVQEENVIAFFKPV-VALENDNVLICIGFDKRTTGEAYVQLPDPGLREQAI 111
Query 136 EKLHRKYLG 144
+ LH + LG
Sbjct 112 KDLHGRLLG 120
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 0/46 (0%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERA 49
R++G A+V + S D+ + A LH + MG R+IEV+ ++ ED +RA
Sbjct 206 RLSGIAFVELPSPDVAEKAREVLHKKYMGRRFIEVYPATREDMQRA 251
> cpv:cgd1_350 CG8205/fusilli (animal)- like, 2x RRM domains,
involved in RNA metabolism
Length=569
Score = 82.0 bits (201), Expect = 6e-16, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 14/150 (9%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
++TGEAYV + S ++++ LHG+ MG RWIEV SS ++F +Q ++S K
Sbjct 356 KMTGEAYVLLPSIKAYELSLTLLHGKRMGKRWIEVLPSSTKEFLICLQ-----ITSLKKQ 410
Query 64 GRDADV--------KGLNLTVLKLRGLPWTCTDNDVVNFFQEHG-FDIGLDSVVLGVAVD 114
++ + + N +VL+LRGLPW+ T+ ++V FF G + + V LG+ +
Sbjct 411 NQNPSIFNDNKIIDRYYNRSVLRLRGLPWSTTEIEIVQFFISGGIYGLNASDVFLGITEN 470
Query 115 GRMNGIAYVELTDAATADAAKEKLHRKYLG 144
R +G A++ L A A+ L+R+ +G
Sbjct 471 QRASGEAWIILPHKCDAFDAQRILNRRVIG 500
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query 76 VLKLRGLPWTCTDNDVVNFFQE----HGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATA 131
V++LRGLPW D++ FF +DI + DG+M G AYV L
Sbjct 317 VVRLRGLPWKAAVLDIIAFFNPICRISSYDIAIS-----YNKDGKMTGEAYVLLPSIKAY 371
Query 132 DAAKEKLHRKYLG 144
+ + LH K +G
Sbjct 372 ELSLTLLHGKRMG 384
Score = 35.0 bits (79), Expect = 0.090, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query 3 KRVTGEAYVNV-HSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERA 49
+R +GEA++ + H D D A R L+ R++G R+IEVF SS ++ A
Sbjct 471 QRASGEAWIILPHKCDAFD-AQRILNRRVIGKRYIEVFISSFQELTTA 517
> hsa:80004 ESRP2, FLJ21918, FLJ22248, RBM35B; epithelial splicing
regulatory protein 2; K14947 epithelial splicing regulatory
protein 1/2
Length=717
Score = 70.5 bits (171), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R TG+A+ ++ A+R H M+G R+IE+FRS+A + ++ + R + T
Sbjct 390 RPTGDAFALFACEELAQAALRR-HKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLT 448
Query 64 GRDADVK-----GLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMN 118
+ G ++LRGLP+T T D+++F E DI V + + GR +
Sbjct 449 APLLPIPFPLAPGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPS 508
Query 119 GIAYVELTDAATADAAKEKLHRKYL 143
G A++++T A A AA ++ H+K +
Sbjct 509 GDAFIQMTSAERALAAAQRCHKKVM 533
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query 75 TVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA 134
TV++ RGLPW +D DV FF+ G ++ V L + GR NG A + D+ D A
Sbjct 247 TVVRARGLPWQSSDQDVARFFK--GLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLA 304
Query 135 KEKLHRKYLG 144
++ H+ ++G
Sbjct 305 LQR-HKHHMG 313
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R GEA + ++ RD+A++ H MG R+IEV++++ E+F + ++ GT
Sbjct 286 RRNGEALIRFVDSEQRDLALQR-HKHHMGVRYIEVYKATGEEFVK--------IAGGTSL 336
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFF-QEHGFDIGLDSVVLGVAVDGRMNGIAY 122
+ + +L+LRGLP++ DV+ F E G + ++ DGR G A+
Sbjct 337 EVARFLSREDQVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAF 396
Query 123 VELTDAATADAAKEKLHRKYLG 144
A AA + H+ LG
Sbjct 397 ALFACEELAQAALRR-HKGMLG 417
Score = 32.0 bits (71), Expect = 0.72, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 0/47 (0%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAM 50
R +G+A++ + S + A + H ++M R++EV S E+ R +
Sbjct 506 RPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVL 552
> mmu:77411 Esrp2, 9530027K23Rik, Rbm35b; epithelial splicing
regulatory protein 2; K14947 epithelial splicing regulatory
protein 1/2
Length=717
Score = 68.2 bits (165), Expect = 8e-12, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R TG+A+ ++ A+R H M+G R+IE+FRS+A + ++ + R A T
Sbjct 390 RPTGDAFALFACEELAQAALRR-HKGMLGKRYIELFRSTAAEVQQVLNRYAASPLLPTLT 448
Query 64 GRDADVK-----GLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMN 118
+ G ++LRGLP+T T D+++F E DI V + + GR +
Sbjct 449 APLLPIPFPLAGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPS 508
Query 119 GIAYVELTDAATADAAKEKLHRKYL 143
G A++++ A AA ++ H+K +
Sbjct 509 GDAFIQMMSVERALAAAQRCHKKMM 533
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query 73 NLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATAD 132
N TV++ RGLPW +D DV FF+ G +I V L + GR NG A + D+ D
Sbjct 245 NETVVRARGLPWQSSDQDVARFFK--GLNIARGGVALCLNAQGRRNGEALIRFVDSEQRD 302
Query 133 AAKEKLHRKYLG 144
A ++ H+ ++G
Sbjct 303 LALQR-HKHHMG 313
Score = 52.4 bits (124), Expect = 5e-07, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R GEA + ++ RD+A++ H MG R+IEV++++ E+F + ++ GT
Sbjct 286 RRNGEALIRFVDSEQRDLALQR-HKHHMGVRYIEVYKATGEEFVK--------IAGGTSL 336
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFF-QEHGFDIGLDSVVLGVAVDGRMNGIAY 122
+ + +L+LRGLP++ DV+ F E G D ++ DGR G A+
Sbjct 337 EVARFLSREDQVILRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAF 396
Query 123 VELTDAATADAAKEKLHRKYLG 144
A AA + H+ LG
Sbjct 397 ALFACEELAQAALRR-HKGMLG 417
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 0/47 (0%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAM 50
R +G+A++ + S + A + H +MM R++EV S E+ R +
Sbjct 506 RPSGDAFIQMMSVERALAAAQRCHKKMMKERYVEVVPCSTEEMSRVL 552
> mmu:207920 Esrp1, 2210008M09Rik, A630065D16, BC031468, MGC25805,
Rbm35a; epithelial splicing regulatory protein 1; K14947
epithelial splicing regulatory protein 1/2
Length=681
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 11/142 (7%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R GEA V S + RD+A++ H MG R+IEV++++ EDF + ++ GT +
Sbjct 264 RRNGEALVRFVSEEHRDLALQR-HKHHMGTRYIEVYKATGEDFLK--------IAGGTSN 314
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAV-DGRMNGIAY 122
+ N ++++RGLP+T T +VV FF +H G +L V DGR G A+
Sbjct 315 EVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAF 374
Query 123 VELTDAATADAAKEKLHRKYLG 144
V A A K H++ LG
Sbjct 375 VLFACEEYAQNALRK-HKELLG 395
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 8/147 (5%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R TG+A+V + A+R H ++G R+IE+FRS+A + ++ + R +
Sbjct 368 RPTGDAFVLFACEEYAQNALRK-HKELLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPT 426
Query 64 GRDADVKGLNLT-------VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGR 116
V ++LRGLP+ T D+++F E DI V + + GR
Sbjct 427 PPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGR 486
Query 117 MNGIAYVELTDAATADAAKEKLHRKYL 143
+G A++++ A A +K H+K +
Sbjct 487 PSGDAFIQMKSTDRAFMAAQKYHKKTM 513
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query 75 TVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA 134
TV++ RGLPW +D D+ FF+ G +I L + GR NG A V D A
Sbjct 225 TVVRARGLPWQSSDQDIARFFK--GLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 282
Query 135 KEKLHRKYLG 144
++ H+ ++G
Sbjct 283 LQR-HKHHMG 291
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 0/42 (0%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAED 45
R +G+A++ + STD +A + H + M R++EVF+ SAE+
Sbjct 486 RPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 527
> hsa:54845 ESRP1, FLJ20171, RBM35A, RMB35A; epithelial splicing
regulatory protein 1; K14947 epithelial splicing regulatory
protein 1/2
Length=677
Score = 66.2 bits (160), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 11/142 (7%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R GEA V S + RD+A++ H MG R+IEV++++ EDF + ++ GT +
Sbjct 264 RRNGEALVRFVSEEHRDLALQR-HKHHMGTRYIEVYKATGEDFLK--------IAGGTSN 314
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAV-DGRMNGIAY 122
+ N ++++RGLP+T T +VV FF +H G +L V DGR G A+
Sbjct 315 EVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAF 374
Query 123 VELTDAATADAAKEKLHRKYLG 144
V A A K H+ LG
Sbjct 375 VLFACEEYAQNALRK-HKDLLG 395
Score = 61.6 bits (148), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R TG+A+V + A+R H ++G R+IE+FRS+A + ++ + R +
Sbjct 368 RPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPT 426
Query 64 GRDADVKGLNLT-------VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGR 116
V ++LRGLP+ T D+++F E DI V + + GR
Sbjct 427 PPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGR 486
Query 117 MNGIAYVELTDAATADAAKEKLHRK 141
+G A++++ A A A +K H+K
Sbjct 487 PSGDAFIQMKSADRAFMAAQKCHKK 511
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query 75 TVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA 134
TV++ RGLPW +D D+ FF+ G +I L + GR NG A V D A
Sbjct 225 TVVRARGLPWQSSDQDIARFFK--GLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 282
Query 135 KEKLHRKYLG 144
++ H+ ++G
Sbjct 283 LQR-HKHHMG 291
Score = 36.2 bits (82), Expect = 0.034, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 0/42 (0%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAED 45
R +G+A++ + S D +A + H + M R++EVF+ SAE+
Sbjct 486 RPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
> mmu:98758 Hnrnpf, 4833420I20Rik, AA407306, Hnrpf, MGC101981,
MGC36971; heterogeneous nuclear ribonucleoprotein F; K12898
heterogeneous nuclear ribonucleoprotein F/H
Length=415
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 18/144 (12%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R +GEA+V + S D +A++ MG R+IEVF+S + + ++ + D
Sbjct 52 RQSGEAFVELESEDDVKLALKKDR-ESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSAND 110
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYV 123
G ++LRGLP+ CT ++V FF G +I + + L V +G++ G A+V
Sbjct 111 G-----------FVRLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFV 157
Query 124 ELTDAATADAA----KEKLHRKYL 143
+ A+ A KE++ +Y+
Sbjct 158 QFASQELAEKALGKHKERIGHRYI 181
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 0/50 (0%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVEL 125
V+KLRGLPW+C+ DV NF + G+ V +GR +G A+VEL
Sbjct 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVEL 61
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query 52 RRVAVMSSGTKDGRDAD----VKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSV 107
R ++ SG D R D V+ + +RGLP+ T+ND+ NFF + V
Sbjct 262 RDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS----PLNPVRV 317
Query 108 VLGVAVDGRMNGIAYVELTDAATADAAKEK 137
+ + DGR+ G A VE A AA K
Sbjct 318 HIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMS 58
++TGEA+V S ++ + A+ H +G R+IEVF+SS E+ + MS
Sbjct 150 KITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSSQEEVRSYSDPPLKFMS 203
> dre:321556 hnrnph1l, fb19a06, wu:fb19a06, zgc:55399, zgc:85960;
heterogeneous nuclear ribonucleoprotein H1, like; K12898
heterogeneous nuclear ribonucleoprotein F/H
Length=407
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R +GEA+V + S D +AV+ MG R++EVF+S+ + + ++ D
Sbjct 48 RPSGEAFVELESEDDLKIAVKKDR-ESMGHRYVEVFKSNNVEMDWVLKHTGPNCPETEGD 106
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYV 123
G +++LRGLP+ C+ ++V FF G +I + + L V GR G A+V
Sbjct 107 G-----------LVRLRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFV 153
Query 124 ELTDAATADAA----KEKLHRKYL 143
+ A+ A KE++ +Y+
Sbjct 154 QFASQDIAEKALKKHKERIGHRYI 177
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 74/182 (40%), Gaps = 47/182 (25%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAED----FERA-----MQRRV 54
R TGEA+V S D+ + A++ H +G R+IE+F+SS + +E MQR
Sbjct 146 RSTGEAFVQFASQDIAEKALKK-HKERIGHRYIEIFKSSRAEVRTHYEPPRKGMGMQRPG 204
Query 55 AV------------MSSG--------------TKDGRDADVKGLNLT---VLKLRGLPWT 85
MS G DGR D T + +RGLP+
Sbjct 205 PYDRPSGGGRGYNGMSRGGSFDRMRRGGYGGGVSDGRYGDGGNFQSTTGHCVHMRGLPYR 264
Query 86 CTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA----KEKLHRK 141
T+ D+ NFF + V + + DGR+ G A VE A AA K + +
Sbjct 265 ATEPDIYNFFSP----LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSNDKANMQHR 320
Query 142 YL 143
Y+
Sbjct 321 YV 322
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query 67 ADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVEL 125
AD +G V+++RGLPW+C+ +V FF ++ +GR +G A+VEL
Sbjct 2 ADDEGF---VVRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVEL 57
> hsa:3185 HNRNPF, HNRPF, MGC110997, OK/SW-cl.23, mcs94-1; heterogeneous
nuclear ribonucleoprotein F; K12898 heterogeneous
nuclear ribonucleoprotein F/H
Length=415
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 18/144 (12%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R +GEA+V + S D +A++ MG R+IEVF+S + + ++ + D
Sbjct 52 RQSGEAFVELGSEDDVKMALKKDR-ESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSAND 110
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYV 123
G ++LRGLP+ CT ++V FF G +I + + L V +G++ G A+V
Sbjct 111 G-----------FVRLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFV 157
Query 124 ELTDAATADAA----KEKLHRKYL 143
+ A+ A KE++ +Y+
Sbjct 158 QFASQELAEKALGKHKERIGHRYI 181
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 0/50 (0%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVEL 125
V+KLRGLPW+C+ DV NF + G V +GR +G A+VEL
Sbjct 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVEL 61
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query 52 RRVAVMSSGTKDGRDAD----VKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSV 107
R ++ SG D R D V+ + +RGLP+ T+ND+ NFF + V
Sbjct 262 RDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS----PLNPVRV 317
Query 108 VLGVAVDGRMNGIAYVELTDAATADAAKEK 137
+ + DGR+ G A VE A AA K
Sbjct 318 HIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMS 58
++TGEA+V S ++ + A+ H +G R+IEVF+SS E+ + MS
Sbjct 150 KITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSSQEEVRSYSDPPLKFMS 203
> xla:379211 esrp1, MGC53361, rbm35a; epithelial splicing regulatory
protein 1; K14947 epithelial splicing regulatory protein
1/2
Length=688
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 11/142 (7%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R GEA V S + RD+A++ H MG R+IEV++++ EDF + ++ GT +
Sbjct 265 RRNGEALVRFVSEEHRDLALQR-HKHHMGNRYIEVYKATGEDFLK--------IAGGTSN 315
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFF-QEHGFDIGLDSVVLGVAVDGRMNGIAY 122
+ N ++++RGLP+T T +V+ FF Q+ G + ++ D R G A+
Sbjct 316 EVAQFLSKENQVIVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAF 375
Query 123 VELTDAATADAAKEKLHRKYLG 144
V A A +K H++ LG
Sbjct 376 VLFACEEYAQNALKK-HKELLG 396
Score = 58.9 bits (141), Expect = 6e-09, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R TG+A+V + A++ H ++G R+IE+FRS+A + ++ + R +
Sbjct 369 RPTGDAFVLFACEEYAQNALKK-HKELLGKRYIELFRSTAAEVQQVLNRYSSAPLIPLPT 427
Query 64 GRDADV------KGLNL-TVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGR 116
V +N+ ++LRGLP+ T D++ F E DI V + + GR
Sbjct 428 PPIIPVLPQPFIPPVNVRDCIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQGR 487
Query 117 MNGIAYVELTDAATADAAKEKLHRKYL 143
+G +++++ A A A +K H+K +
Sbjct 488 PSGDSFIQMKSADRAYLAAQKCHKKTM 514
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query 75 TVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA 134
T+++ RGLPW +D D+ FF+ G +I L + GR NG A V D A
Sbjct 226 TIIRARGLPWQSSDQDIARFFK--GLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 283
Query 135 KEKLHRKYLG 144
++ H+ ++G
Sbjct 284 LQR-HKHHMG 292
Score = 35.8 bits (81), Expect = 0.043, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 0/42 (0%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAED 45
R +G++++ + S D +A + H + M R++EVF+ SAE+
Sbjct 487 RPSGDSFIQMKSADRAYLAAQKCHKKTMKDRYVEVFQCSAEE 528
> mmu:56258 Hnrnph2, DXHXS1271E, Ftp-3, Ftp3, H', HNRNP, Hnrph2;
heterogeneous nuclear ribonucleoprotein H2; K12898 heterogeneous
nuclear ribonucleoprotein F/H
Length=449
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R +GEA+V + S D +A++ MG R++EVF+S++ + + ++ D
Sbjct 52 RPSGEAFVELESEDEVKLALKKDR-ETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTAND 110
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYV 123
G ++LRGLP+ C+ ++V FF G +I + + L V GR G A+V
Sbjct 111 G-----------FVRLRGLPFGCSKEEIVQFFS--GLEIVPNGMTLPVDFQGRSTGEAFV 157
Query 124 ELTDAATADAA----KEKLHRKYL 143
+ A+ A KE++ +Y+
Sbjct 158 QFASQEIAEKALKKHKERIGHRYI 181
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 0/50 (0%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVEL 125
V+K+RGLPW+C+ +V+ FF + G V +GR +G A+VEL
Sbjct 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVEL 61
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELT--DAATADA 133
+ +RGLP+ T+ND+ NFF + V + + DGR+ G A VE + A A
Sbjct 290 CVHMRGLPYRATENDIYNFFS----PLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAM 345
Query 134 AKEKLHRKY 142
AK+K + ++
Sbjct 346 AKDKANMQH 354
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSS 42
R TGEA+V S ++ + A++ H +G R+IE+F+SS
Sbjct 150 RSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSS 187
> dre:572992 esrp2, FLJ20171, MGC55721, MGC77254, cb404, fa07a06,
rbm35b, sb:cb404, zgc:77254; epithelial splicing regulatory
protein 2; K14947 epithelial splicing regulatory protein
1/2
Length=736
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R TG+A+V + A++ H +++G R+IE+FRS+A + ++ + R ++ T
Sbjct 367 RPTGDAFVLFACEEYAQNALKK-HKQILGKRYIELFRSTAAEVQQVLNRYMSTPLISTLP 425
Query 64 GRDAD-------------VKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLG 110
G ++LRGLP+T D++ F EH DI V +
Sbjct 426 PPPPPMVSVPVLATPPLITTGNTRDCIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMV 485
Query 111 VAVDGRMNGIAYVELTDAATADAAKEKLHRKYL 143
+ GR +G A++++ A A +K H+K +
Sbjct 486 LNQQGRPSGDAFIQMKSADRAFMVAQKCHKKMM 518
Score = 58.9 bits (141), Expect = 6e-09, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 11/142 (7%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R GEA V +++ RD+A+ H MG R+IEV++++ E+F + ++ GT +
Sbjct 263 RRNGEALVRFINSEHRDMALDR-HKHHMGSRYIEVYKATGEEFLK--------IAGGTSN 313
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFF-QEHGFDIGLDSVVLGVAVDGRMNGIAY 122
+ N ++++RGLP+T T DV+ F E G + ++ DGR G A+
Sbjct 314 EVAQFLSKENQMIIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAF 373
Query 123 VELTDAATADAAKEKLHRKYLG 144
V A A +K H++ LG
Sbjct 374 VLFACEEYAQNALKK-HKQILG 394
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query 75 TVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA 134
TV++ RGLPW +D D+ FF+ G +I V L + GR NG A V ++ D A
Sbjct 224 TVIRARGLPWQSSDQDIARFFK--GLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMA 281
Query 135 KEKLHRKYLG 144
++ H+ ++G
Sbjct 282 LDR-HKHHMG 290
Score = 36.2 bits (82), Expect = 0.041, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 0/42 (0%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAED 45
R +G+A++ + S D + + H +MM R++EVF+ S E+
Sbjct 491 RPSGDAFIQMKSADRAFMVAQKCHKKMMKDRYVEVFQCSTEE 532
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA 134
+++++GLP+ D+++FFQ G+ + DSV++ G+ +G A V A A
Sbjct 660 LVRMQGLPYNAGVKDILSFFQ--GYQLQADSVLVLYNWSGQRSGEALVTFPSEKAARRA 716
> mmu:59013 Hnrnph1, AI642080, E430005G16Rik, Hnrnph, Hnrph1;
heterogeneous nuclear ribonucleoprotein H1; K12898 heterogeneous
nuclear ribonucleoprotein F/H
Length=449
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 18/144 (12%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R +GEA+V + S D +A++ MG R++EVF+S+ + + ++ D
Sbjct 52 RPSGEAFVELESEDEVKLALKKDR-ETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTAND 110
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYV 123
G ++LRGLP+ C+ ++V FF G +I + + L V GR G A+V
Sbjct 111 G-----------FVRLRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFV 157
Query 124 ELTDAATADAA----KEKLHRKYL 143
+ A+ A KE++ +Y+
Sbjct 158 QFASQEIAEKALKKHKERIGHRYI 181
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 0/50 (0%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVEL 125
V+K+RGLPW+C+ ++V FF + G + +GR +G A+VEL
Sbjct 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVEL 61
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAK 135
+ +RGLP+ T+ND+ NFF + V + + DGR+ G A VE A AA
Sbjct 290 CVHMRGLPYRATENDIYNFFS----PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAM 345
Query 136 EK 137
K
Sbjct 346 SK 347
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSS 42
R TGEA+V S ++ + A++ H +G R+IE+F+SS
Sbjct 150 RSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSS 187
> hsa:3187 HNRNPH1, DKFZp686A15170, HNRPH, HNRPH1, hnRNPH; heterogeneous
nuclear ribonucleoprotein H1 (H); K12898 heterogeneous
nuclear ribonucleoprotein F/H
Length=449
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 18/144 (12%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R +GEA+V + S D +A++ MG R++EVF+S+ + + ++ D
Sbjct 52 RPSGEAFVELESEDEVKLALKKDR-ETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTAND 110
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYV 123
G ++LRGLP+ C+ ++V FF G +I + + L V GR G A+V
Sbjct 111 G-----------FVRLRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFV 157
Query 124 ELTDAATADAA----KEKLHRKYL 143
+ A+ A KE++ +Y+
Sbjct 158 QFASQEIAEKALKKHKERIGHRYI 181
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 0/50 (0%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVEL 125
V+K+RGLPW+C+ ++V FF + G + +GR +G A+VEL
Sbjct 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVEL 61
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAK 135
+ +RGLP+ T+ND+ NFF + V + + DGR+ G A VE A AA
Sbjct 290 CVHMRGLPYRATENDIYNFFS----PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAM 345
Query 136 EK 137
K
Sbjct 346 SK 347
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSS 42
R TGEA+V S ++ + A++ H +G R+IE+F+SS
Sbjct 150 RSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSS 187
> dre:560190 esrp1, rbm35a, wu:fi28a07, zgc:154050; epithelial
splicing regulatory protein 1; K14947 epithelial splicing regulatory
protein 1/2
Length=714
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 80/153 (52%), Gaps = 15/153 (9%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRR---------- 53
R TG+A+V + A++ H M+G R+IE+F+S+A + ++ + +
Sbjct 368 RPTGDAFVLFSCEEHAQNALKK-HKDMLGKRYIELFKSTAAEVQQVLNKYSSAPLIPVAP 426
Query 54 ---VAVMSSGTKDGRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLG 110
++V++ T + A V G+ V +LRGLP+ + D++ F E+G DI V +
Sbjct 427 SPILSVVAPPTFVPQTAAVPGVRDCV-RLRGLPYDASIQDILVFLGEYGADIKTHGVHMV 485
Query 111 VAVDGRMNGIAYVELTDAATADAAKEKLHRKYL 143
+ GR +G A++++ A A A ++ H++ +
Sbjct 486 LNHQGRPSGEAFIQMRSAERAFLAAQRCHKRSM 518
Score = 59.3 bits (142), Expect = 4e-09, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 11/142 (7%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R GEA V S + RD+A++ H MG R+IEV++++ EDF + ++ GT +
Sbjct 264 RRNGEALVRFESEEHRDLALQR-HKHHMGGRYIEVYKATGEDFLK--------IAGGTSN 314
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEH-GFDIGLDSVVLGVAVDGRMNGIAY 122
+ + N ++++RGLP+ T V+ FF G + ++ DGR G A+
Sbjct 315 EVASFLSRENQIIVRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAF 374
Query 123 VELTDAATADAAKEKLHRKYLG 144
V + A A +K H+ LG
Sbjct 375 VLFSCEEHAQNALKK-HKDMLG 395
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query 75 TVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA 134
TV++ RGLPW +D D+ FF+ G +I L + GR NG A V D A
Sbjct 225 TVIRARGLPWQSSDQDIARFFR--GLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLA 282
Query 135 KEKLHRKYLG 144
++ H+ ++G
Sbjct 283 LQR-HKHHMG 291
Score = 35.4 bits (80), Expect = 0.058, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 0/42 (0%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAED 45
R +GEA++ + S + +A + H R M R++EVF SA++
Sbjct 491 RPSGEAFIQMRSAERAFLAAQRCHKRSMKERYVEVFACSAQE 532
> dre:402984 hnrnph1, MGC77712, zgc:77712; heterogeneous nuclear
ribonucleoprotein H1; K12898 heterogeneous nuclear ribonucleoprotein
F/H
Length=403
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R +GEA+V S + +AV+ MG R++EVF+S++ + + ++ D
Sbjct 48 RPSGEAFVEFESEEDLKIAVKKDR-ETMGHRYVEVFKSNSVEMDWVLKHTGPNCPETGGD 106
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYV 123
G +++LRGLP+ C+ ++V FF G +I + + L V GR G A+V
Sbjct 107 G-----------LVRLRGLPFGCSKEEIVQFFA--GLEIVPNGITLPVDFQGRSTGEAFV 153
Query 124 ELTDAATADAA----KEKLHRKYL 143
+ A+ A KE++ +Y+
Sbjct 154 QFASQDIAEKALKKHKERIGHRYI 177
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 67/169 (39%), Gaps = 40/169 (23%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDF--ERAMQRRVAVMSSGT 61
R TGEA+V S D+ + A++ H +G R+IE+F+SS + QR+V M +
Sbjct 146 RSTGEAFVQFASQDIAEKALKK-HKERIGHRYIEIFKSSRAEVRTHYEPQRKVMGMQRPS 204
Query 62 KDGRDADVKGLNLT---------------------------------VLKLRGLPWTCTD 88
R +G N + +RGLP+ T+
Sbjct 205 PYDRPGGGRGYNSMGRGVSFERMRRGGYGGDGRYGDSGSSFQSTTGHCVHMRGLPYRATE 264
Query 89 NDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKEK 137
D+ NFF + V L + DGR+ G A VE A AA K
Sbjct 265 TDIYNFFS----PLNPVRVHLEIGPDGRVTGEADVEFATHEDAVAAMSK 309
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query 67 ADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVEL 125
AD +G V+++RGLPW+C+ ++V FF E S+ +GR +G A+VE
Sbjct 2 ADGEGF---VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEF 57
> hsa:3188 HNRNPH2, FTP3, HNRPH', HNRPH2, hnRNPH'; heterogeneous
nuclear ribonucleoprotein H2 (H'); K12898 heterogeneous nuclear
ribonucleoprotein F/H
Length=449
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R +GEA+V + S + +A++ MG R++EVF+S++ + + ++ D
Sbjct 52 RPSGEAFVELESEEEVKLALKKDR-ETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTAND 110
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYV 123
G ++LRGLP+ C+ ++V FF G +I + + L V GR G A+V
Sbjct 111 G-----------FVRLRGLPFGCSKEEIVQFFS--GLEIVPNGMTLPVDFQGRSTGEAFV 157
Query 124 ELTDAATADAA----KEKLHRKYL 143
+ A+ A KE++ +Y+
Sbjct 158 QFASQEIAEKALKKHKERIGHRYI 181
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 0/62 (0%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAK 135
V+K+RGLPW+C+ ++V+ FF + G + +GR +G A+VEL A
Sbjct 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query 136 EK 137
+K
Sbjct 72 KK 73
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELT--DAATADA 133
+ +RGLP+ T+ND+ NFF + V + + DGR+ G A VE + A A
Sbjct 290 CVHMRGLPYRATENDIYNFFS----PLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAM 345
Query 134 AKEKLHRKY 142
AK+K + ++
Sbjct 346 AKDKANMQH 354
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSS 42
R TGEA+V S ++ + A++ H +G R+IE+F+SS
Sbjct 150 RSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSS 187
> xla:100158276 grsf1; G-rich RNA sequence binding factor 1
Length=348
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query 7 GEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKDGRD 66
G+A + S + AV H + MG R++EVF + ++ E + R + +S
Sbjct 46 GDAVIEFESAEDVQKAVEQ-HKKYMGQRYVEVFEMNQKEAESLLNRMHSALSPTRPSSMS 104
Query 67 ADVKGLNLT-----VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIA 121
+ + +++LRGLP++C++ D+++FF G DI + + + GR +G A
Sbjct 105 LSPQSSMASPPSDGIVRLRGLPYSCSEQDIIHFFS--GLDIADEGITFVLDQRGRKSGEA 162
Query 122 YVELTDAATADAAKEKLHRKYLG 144
+V+ AD A K H++ +G
Sbjct 163 FVQFLSQEHADQALLK-HKQEIG 184
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query 74 LTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADA 133
+ ++++RGLPW+CT +DV+NFF + G D V DG+ G A +E A
Sbjct 1 MFIVRVRGLPWSCTADDVLNFFDDSNVRNGTDGVHFIFNRDGKPRGDAVIEFESAEDVQK 60
Query 134 AKEKLHRKYLG 144
A E+ H+KY+G
Sbjct 61 AVEQ-HKKYMG 70
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 49/183 (26%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERA---MQRRVAVMSSG 60
R +GEA+V S + D A+ H + +G R+IE+F S D + A +RR V +
Sbjct 157 RKSGEAFVQFLSQEHADQALLK-HKQEIGSRYIEIFPSRRNDVQTARFPFRRRKGVTFAP 215
Query 61 T-KDGRDAD-----------------------VKGL--------NLTVLK------LRGL 82
T KD D D VK + + TV+ +RGL
Sbjct 216 TIKDLYDPDNCINNTSKDLLSDVPENGHINDYVKEMSAKSVDVHDFTVMSPVHDIHIRGL 275
Query 83 PWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVD-GRMNGIAYVELT--DAATADAAKEKLH 139
P+ + D+ NFF I + + + D G G A V D A A AK + H
Sbjct 276 PFHASGQDIANFFHP----IMPLKISIEYSADAGGATGEAVVRFLTHDDAVAAMAKNRCH 331
Query 140 RKY 142
++
Sbjct 332 SQH 334
> xla:432071 hnrnph1-a, MGC78776, hnrnph, hnrnph2, hnrph, hnrph1;
heterogeneous nuclear ribonucleoprotein H1 (H); K12898 heterogeneous
nuclear ribonucleoprotein F/H
Length=441
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 18/144 (12%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R +GEA+V + D +AV+ M R++EVF+S++ + + ++ D
Sbjct 51 RPSGEAFVEFETEDDLQLAVKKDRA-TMAHRYVEVFKSNSVEMDWVLKHTGPNSPDTAND 109
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYV 123
G ++LRGLP+ C+ ++V FF G +I + + L V GR G A+V
Sbjct 110 G-----------FVRLRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFV 156
Query 124 ELTDAATADAA----KEKLHRKYL 143
+ A+ A KE++ +Y+
Sbjct 157 QFASQEIAEKALKKHKERIGHRYI 180
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 0/50 (0%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVEL 125
V+K+RGLPW+C+ +++ NFF E GL V +GR +G A+VE
Sbjct 11 VVKVRGLPWSCSHDEIENFFSESKIANGLSGVHFIYTREGRPSGEAFVEF 60
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAK 135
+ +RGLP+ T+ D+ FF + V + + DGR+ G A VE A AA
Sbjct 278 CVHMRGLPYRATETDIYTFFSP----LNPVRVHIEIGADGRVTGEADVEFASHEDAVAAM 333
Query 136 EK 137
K
Sbjct 334 SK 335
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSS 42
R TGEA+V S ++ + A++ H +G R+IE+F+SS
Sbjct 149 RSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSS 186
> cel:ZK1067.6 sym-2; SYnthetic lethal with Mec family member
(sym-2); K14947 epithelial splicing regulatory protein 1/2
Length=618
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 20/147 (13%)
Query 1 SAKRVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSG 60
S R GE V S + RD+A++ H + R+IEV+++ ++F M
Sbjct 217 SEGRRNGEVLVQFSSQESRDLALKR-HRNFLLSRYIEVYKAGLDEF----------MHVA 265
Query 61 TKDGRDA-DVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNG 119
T +A + N ++++RGLP+ CTD + FF+ D ++ DGR G
Sbjct 266 TGSSTEAMEFVSANAIIVRMRGLPYDCTDAQIRTFFEPLKLT---DKILFITRTDGRPTG 322
Query 120 IAYVELTDAATADAAKEKL--HRKYLG 144
A+V+ T + A++ L HR+ +G
Sbjct 323 DAFVQF---ETEEDAQQGLLKHRQVIG 346
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R TG+A+V + + + H +++G R+IE+F+S+A + ++ ++R + SS
Sbjct 319 RPTGDAFVQFETEEDAQQGLLK-HRQVIGQRYIELFKSTAAEVQQVVKRCNLINSSPAVA 377
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYV 123
+ ++LRGLP+ T +V F + + V + G +G A++
Sbjct 378 NAVEAPEEKKKDCVRLRGLPYEATVQHIVTFLGDFATMVKFQGVHMVYNNQGHPSGEAFI 437
Query 124 ELTDAATADAAKEKLHRKYL 143
++ + A A +H ++
Sbjct 438 QMINEQAASACAAGVHNNFM 457
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAK 135
V + RGLPW +D+ V FF G DI + L ++ +GR NG V+ + + D A
Sbjct 182 VCRARGLPWQASDHHVAQFFA--GLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLAL 239
Query 136 EKLHRKYL 143
++ HR +L
Sbjct 240 KR-HRNFL 246
> hsa:2926 GRSF1, FLJ13125; G-rich RNA sequence binding factor
1
Length=318
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 21/121 (17%)
Query 27 HGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKDGRDADVKGLNLTVLKLRGLPWTC 86
H MG R++EV+ + ED + A+ + + V SS +N V++LRGLP++C
Sbjct 51 HRMYMGQRYVEVYEINNEDVD-ALMKSLQVKSSPV----------VNDGVVRLRGLPYSC 99
Query 87 TDNDVVNFFQEHGFDIGLDSVVLGVAVD---GRMNGIAYVELTDAATADAAKEKLHRKYL 143
+ D+V+FF GL+ V + +D R G AYV+ + A+ A K HR+ +
Sbjct 100 NEKDIVDFFA------GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLK-HREEI 152
Query 144 G 144
G
Sbjct 153 G 153
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query 3 KRVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRS 41
+R TGEAYV +M + A+ H +G R+IE+F S
Sbjct 125 RRKTGEAYVQFEEPEMANQALLK-HREEIGNRYIEIFPS 162
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query 90 DVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKEKLHRKYLG 144
DV+NFF + G + + + DG+ G A +E+ A EK HR Y+G
Sbjct 3 DVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK-HRMYMG 56
> xla:446758 hnrnph1-b, MGC130700, MGC80081, hnrnph, hnrnph1,
hnrph, hnrph1, hnrph2; heterogeneous nuclear ribonucleoprotein
H1 (H); K12898 heterogeneous nuclear ribonucleoprotein F/H
Length=456
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 18/144 (12%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R +GEA+V + + + ++ MG R++EVF+S+ + + ++ D
Sbjct 51 RPSGEAFVEFETEEDLKLGLKKDRA-TMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTAND 109
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYV 123
G ++LRGLP+ C+ ++V FF G +I + + L V GR G A+V
Sbjct 110 G-----------FVRLRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFV 156
Query 124 ELTDAATADAA----KEKLHRKYL 143
+ A+ A KE++ +Y+
Sbjct 157 QFASQEIAEKALKKHKERIGHRYI 180
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 0/50 (0%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVEL 125
V+K+RGLPW+C+ +++ NFF E GL + +GR +G A+VE
Sbjct 11 VVKVRGLPWSCSHDEIENFFSECKIANGLSGIHFIYTREGRPSGEAFVEF 60
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAK 135
+ +RGLP+ T+ D+ FF + V + + DGR+ G A VE A AA
Sbjct 278 CVHMRGLPYRATETDIYTFFSP----LNPVRVHIEIGADGRVTGEADVEFATHEDAVAAM 333
Query 136 EK 137
K
Sbjct 334 SK 335
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSS 42
R TGEA+V S ++ + A++ H +G R+IE+F+SS
Sbjct 149 RSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSS 186
> mmu:231413 Grsf1, B130010H02, BB232551, C80280, D5Wsu31e; G-rich
RNA sequence binding factor 1
Length=362
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 21/121 (17%)
Query 27 HGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKDGRDADVKGLNLTVLKLRGLPWTC 86
H MG R++EV+ + ED + M+ S DG V++LRGLP++C
Sbjct 95 HRMYMGQRYVEVYEINNEDVDALMKSLQVKPSPVLSDG-----------VVRLRGLPYSC 143
Query 87 TDNDVVNFFQEHGFDIGLDSVVLGVAVDG---RMNGIAYVELTDAATADAAKEKLHRKYL 143
+ D+V+FF GL+ V + +D R G AYV+ + A+ A K HR+ +
Sbjct 144 NEKDIVDFFA------GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLK-HREEI 196
Query 144 G 144
G
Sbjct 197 G 197
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query 59 SGTKDGRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMN 118
S +K G + D ++ +++ +GLPW+CT DV+NFF + + + + DG+
Sbjct 20 SPSKLGDEVD----DVYLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRR 75
Query 119 GIAYVELTDAATADAAKEKLHRKYLG 144
G A +E+ A EK HR Y+G
Sbjct 76 GDALIEMESEQDVQKALEK-HRMYMG 100
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query 3 KRVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRS 41
+R TGEAYV +M + A+ H +G R+IE+F S
Sbjct 169 RRKTGEAYVQFEEPEMANQALLK-HREEIGNRYIEIFPS 206
> xla:494658 hnrnph3, hnrph3; heterogeneous nuclear ribonucleoprotein
H3 (2H9); K12898 heterogeneous nuclear ribonucleoprotein
F/H
Length=342
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query 31 MGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKDGRDADVKGLNLTVLKLRGLPWTCTDND 90
MG R+IEVF+S+ + E V+ + D + D G ++LRGLP+ C+ +
Sbjct 1 MGHRYIEVFKSNNTEME-------WVLKHNSTDDVETDSDG----TVRLRGLPFGCSKEE 49
Query 91 VVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA----KEKLHRKYL 143
+V FF G I + + L V GR G A+V+ A+ A KE++ +Y+
Sbjct 50 IVQFFS--GLRIVPNGITLTVDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYI 104
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA- 134
+ +RGLP+ +++D+ NFF + V + V DGR G A VE A AA
Sbjct 212 FVHMRGLPFRASESDIANFFSP----LTPIRVHIDVGADGRATGEADVEFATHEDAVAAM 267
Query 135 ---KEKLHRKYL 143
K + +Y+
Sbjct 268 SKDKNNMQHRYI 279
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSS 42
R TGEA+V S ++ + A+ H +G R+IE+F+SS
Sbjct 73 RSTGEAFVQFASKEIAENALGK-HKERIGHRYIEIFKSS 110
> dre:563249 grsf1, MGC153305, wu:fb62c04, zgc:153305; G-rich
RNA sequence binding factor 1
Length=301
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query 75 TVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA 134
TV++LRGLP++CT+ D++ FF G D+ D V + + G+ +G A+VE A A+ A
Sbjct 134 TVVRLRGLPYSCTEGDIIRFFS--GLDVVEDGVTIILNRRGKSSGDAFVEFATKAMAEKA 191
Query 135 KEKLHRKYLG 144
+K R+ LG
Sbjct 192 LKK-DREILG 200
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query 73 NLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATAD 132
L +++ +GLPW+CT D+++FF E G++ V + G+ +G A++EL
Sbjct 35 ELFIVQAKGLPWSCTAEDIMSFFSECRIRGGVNGVHILYNKYGKPSGQAFIELEHEEDVG 94
Query 133 AAKEKLHRKY 142
A ++ HR Y
Sbjct 95 KALDQ-HRHY 103
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVF---RSSAEDFERAMQR-RVAVMSS 59
+ +G+A+V + M + A++ ++G R+IE+F +S+ R+ Q RV
Sbjct 173 KSSGDAFVEFATKAMAEKALKK-DREILGNRYIEIFPAMKSAIPSQNRSWQNDRVF---- 227
Query 60 GTKDGRDADVKGLNLT--VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRM 117
T D ++ +T V+ +RGLP+ D+V FF + L VV+ +G+
Sbjct 228 -TPRAEDPPLRNTAVTKNVIHMRGLPFDAKAEDIVKFFA----PVRLMKVVVEFGPEGKP 282
Query 118 NGIA 121
G A
Sbjct 283 TGEA 286
> ath:AT5G66010 RNA binding / nucleic acid binding / nucleotide
binding
Length=255
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query 4 RVTGEAYVNVHSTDMRDVAV-RTLHGRMMGPRWIEVFRSSAEDFERAM---------QRR 53
+ +GEA+V ++A+ R H MG R++EVFR S +D+ A+ + R
Sbjct 85 KFSGEAFVVFAGPMQVEIALQRDRHN--MGRRYVEVFRCSKQDYYNAVAAEEGAYEYEVR 142
Query 54 VAVMSSG-TKDGRDADVKGLNLT-VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGV 111
+ +G ++ R ++ + L T VLK+RGLP++ ++ FF G+ + V +
Sbjct 143 ASPPPTGPSRAKRFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFF--SGYKVIQGRVQVVC 200
Query 112 AVDGRMNGIAYVELTDAATADAAKEK 137
DG+ G A+VE A A K
Sbjct 201 RPDGKATGEAFVEFETGEEARRAMAK 226
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query 74 LTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSV-VLGVAVDGRMNGIAYVELTDAATAD 132
V++LRGLP+ C D D+ FF GL+ V VL V+ +G+ +G A+V +
Sbjct 48 FPVVRLRGLPFNCADIDIFEFF------AGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVE 101
Query 133 AAKEK----LHRKYL 143
A ++ + R+Y+
Sbjct 102 IALQRDRHNMGRRYV 116
> ath:AT3G20890 RNA binding / nucleic acid binding / nucleotide
binding; K12898 heterogeneous nuclear ribonucleoprotein F/H
Length=278
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 49/184 (26%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVA-------- 55
+VTGEA+ + D A++ + + MG R++EVFRS+ +++ +A+ VA
Sbjct 79 KVTGEAFCVLGYPLQVDFALQK-NRQNMGRRYVEVFRSTKQEYYKAIANEVAESRVHGMA 137
Query 56 -----------------------------------VMSSGTKDGRDADVKGLNLTVLKLR 80
V + + D D++ + +L+LR
Sbjct 138 SGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPRRHVQRARSSDDGKEDIE--HTGILRLR 195
Query 81 GLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKEKLHR 140
GLP++ D+++FF++ F++ D V + V +GR G A+VE +A + AA K R
Sbjct 196 GLPFSAGKEDILDFFKD--FELSEDFVHVTVNGEGRPTGEAFVEFRNAEDSRAAMVK-DR 252
Query 141 KYLG 144
K LG
Sbjct 253 KTLG 256
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query 78 KLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKEK 137
+LRGLP+ C + DVV FF HG D+ +D VL V + ++ G A+ L D A +K
Sbjct 46 RLRGLPFDCAELDVVEFF--HGLDV-VD--VLFVHRNNKVTGEAFCVLGYPLQVDFALQK 100
Query 138 LHRKYLG 144
+R+ +G
Sbjct 101 -NRQNMG 106
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query 4 RVTGEAYVNV-HSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQR 52
R TGEA+V ++ D R V+ + +G R+IE+F SS E+ E A+ R
Sbjct 229 RPTGEAFVEFRNAEDSRAAMVKDR--KTLGSRYIELFPSSVEELEEALSR 276
> cel:Y73B6BL.33 hypothetical protein; K12898 heterogeneous nuclear
ribonucleoprotein F/H
Length=610
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 21/137 (15%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63
R GEAYV +T+ A+ + + R+IEVF A++ E +
Sbjct 100 RPNGEAYVEFKNTEEAGKAMEN-DRKEISNRYIEVFTVEADEAEFEFRP----------- 147
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLG--VAVDGRMNGIA 121
D D G V++LRG+PW+C ++DV FF+ G + +V+G R +G A
Sbjct 148 --DPDSNGEVNHVIRLRGVPWSCKEDDVRKFFE--GLEPPPAEIVIGGTGGPRSRPSGEA 203
Query 122 YVELTDAATADAAKEKL 138
+V T T DAA++ +
Sbjct 204 FVRFT---TQDAAEKAM 217
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query 77 LKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKE 136
++LRGLP+ T+ D+ FF G I V V GR NG AYVE + A A E
Sbjct 66 IRLRGLPFNATEKDIHEFFA--GLTI---ERVKFVCTTGRPNGEAYVEFKNTEEAGKAME 120
Score = 35.4 bits (80), Expect = 0.058, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERA 49
R +GEA+V + D + A+ + R MG R++EVF SS +F RA
Sbjct 198 RPSGEAFVRFTTQDAAEKAM-DYNNRHMGSRYVEVFMSSMVEFNRA 242
> mmu:432467 Hnrnph3, AA693301, AI666703, Hnrph3; heterogeneous
nuclear ribonucleoprotein H3; K12898 heterogeneous nuclear
ribonucleoprotein F/H
Length=346
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA- 134
++LRGLP+ C+ ++V FFQ G +I + + L + GR G A+V+ A+ A
Sbjct 17 TVRLRGLPFGCSKEEIVQFFQ--GLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENAL 74
Query 135 ---KEKLHRKYL 143
KE++ +Y+
Sbjct 75 GKHKERIGHRYI 86
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA- 134
+ +RGLP+ T+ND+ NFF + V + + DGR G A VE A AA
Sbjct 196 FVHMRGLPFRATENDIANFFSP----LNPIRVHIDIGADGRATGEADVEFVTHEDAVAAM 251
Query 135 ---KEKLHRKYL 143
K + +Y+
Sbjct 252 SKDKNNMQHRYI 263
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSS 42
R TGEA+V S ++ + A+ H +G R+IE+FRSS
Sbjct 55 RSTGEAFVQFASKEIAENALGK-HKERIGHRYIEIFRSS 92
> hsa:3189 HNRNPH3, 2H9, FLJ34092, HNRPH3; heterogeneous nuclear
ribonucleoprotein H3 (2H9); K12898 heterogeneous nuclear
ribonucleoprotein F/H
Length=346
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA- 134
++LRGLP+ C+ ++V FFQ G +I + + L + GR G A+V+ A+ A
Sbjct 17 TVRLRGLPFGCSKEEIVQFFQ--GLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENAL 74
Query 135 ---KEKLHRKYL 143
KE++ +Y+
Sbjct 75 GKHKERIGHRYI 86
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA- 134
+ +RGLP+ T+ND+ NFF + V + + DGR G A VE A AA
Sbjct 196 FVHMRGLPFRATENDIANFFSP----LNPIRVHIDIGADGRATGEADVEFVTHEDAVAAM 251
Query 135 ---KEKLHRKYL 143
K + +Y+
Sbjct 252 SKDKNNMQHRYI 263
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSS 42
R TGEA+V S ++ + A+ H +G R+IE+FRSS
Sbjct 55 RSTGEAFVQFASKEIAENALGK-HKERIGHRYIEIFRSS 92
> pfa:PF10_0235 RNA binding protein, putative
Length=160
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 0/72 (0%)
Query 72 LNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATA 131
+NL LKLRGLP+ ++ ++ NFF++ + + + + G AYV D A
Sbjct 52 INLPRLKLRGLPFDASEEEIKNFFRDFQLTKQAYPIHIIKGIKNKPTGHAYVYFDDEEEA 111
Query 132 DAAKEKLHRKYL 143
A + ++RKY+
Sbjct 112 RNACQAMNRKYI 123
> dre:387255 rbm19, npo; RNA binding motif protein 19; K14787
multiple RNA-binding domain-containing protein 1
Length=926
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query 1 SAKRVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSG 60
S R +G YV++ S + A+R L MG R+IEVFR++ +R +R + +
Sbjct 323 SDGRNSGYVYVDLRSEAEVERALR-LDKDYMGGRYIEVFRANNFKNDRRSSKRSEMEKNF 381
Query 61 TKDGRDADVKGLNLTVLKL--RGLPWTCTDNDVVNFFQEHG 99
++ +D + + +L R +P+TCT+ D+ F +HG
Sbjct 382 VRELKDDEEEEDVAESGRLFIRNMPYTCTEEDLKEVFSKHG 422
Score = 28.9 bits (63), Expect = 5.5, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query 58 SSGTKDGRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVA--VDG 115
+S K R A TV KLRG P+ + V F + L V + A DG
Sbjct 273 TSSQKSTRPAIEPTTEFTV-KLRGAPFNVKEQQVKEFM------MPLKPVAIRFAKNSDG 325
Query 116 RMNGIAYVELTDAATADAAKEKLHRKYLG 144
R +G YV+L A + A +L + Y+G
Sbjct 326 RNSGYVYVDLRSEAEVERAL-RLDKDYMG 353
> dre:445379 rbm12, zgc:193560, zgc:193570; RNA binding motif
protein 12
Length=876
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 21/157 (13%)
Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEV-------FRSS------AEDFERAM 50
R +G A V +S A++ G M+G R+IEV +R S D E
Sbjct 339 RNSGRALVKFYSPHESFEALKRNAG-MIGQRYIEVSPATERQWRESVGHSKAGGDSEHNR 397
Query 51 QRRVAVMSSGTKDGRDADVKG---LNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSV 107
RR + S G A + L+ V L+GLP+ + + FF+ DI DS+
Sbjct 398 HRRRSANSPTPSSGERARSRSPHKLDYCVY-LKGLPYEAENKQIFEFFKN--LDIVEDSI 454
Query 108 VLGVAVDGRMNGIAYVELTDAATADAAKEKLHRKYLG 144
+ +GR G +VE + AA H +Y+G
Sbjct 455 YIAYGPNGRATGEGFVEFRNEMDYKAAL-GCHMQYMG 490
Score = 32.3 bits (72), Expect = 0.53, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query 75 TVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA 134
T++K++ +P+T T +++++FF +G+ + SV L + G G A V A AA
Sbjct 800 TIVKIQNMPFTVTVDEIIDFF--YGYQVLPGSVCLQFSDKGLPTGEAMVAFDSHDEAMAA 857
Query 135 KEKLHRKYLG 144
L+ + +G
Sbjct 858 VMDLNDRPIG 867
> xla:379184 MGC132368; hypothetical protein MGC53694
Length=658
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query 79 LRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKEKL 138
L GLP+T ++DV FF HGFD+ + + V +G +G AYV+ A A+ +
Sbjct 156 LNGLPYTADEHDVKEFF--HGFDV--EDINFCVRQNGDKDGKAYVKFATFQDAKASLSR- 210
Query 139 HRKYLG 144
H++Y+G
Sbjct 211 HKEYIG 216
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query 77 LKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKE 136
++L +P+T T ++++FF HG+++ DS V +D G A V + + A AA
Sbjct 586 IRLENVPYTATIEEILDFF--HGYNVVPDS----VKMDYNSKGTAIVHMENYYEAAAAIN 639
Query 137 KLHRKYLG 144
+L+ + +G
Sbjct 640 ELNERPIG 647
> hsa:10137 RBM12, HRIHFB2091, KIAA0765, SWAN; RNA binding motif
protein 12
Length=932
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query 79 LRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKEKL 138
L+GLP+ + V++FF++ DI DS+ + +G+ G +VE + A AA +
Sbjct 434 LKGLPFEAENKHVIDFFKK--LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR- 490
Query 139 HRKYLG 144
H++Y+G
Sbjct 491 HKQYMG 496
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query 75 TVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA 134
TV+K++ +P+T + +++++FF +G+ + SV L G G A V A AA
Sbjct 856 TVIKVQNMPFTVSIDEILDFF--YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 913
Query 135 KEKLHRKYLG 144
L+ + +G
Sbjct 914 VIDLNDRPIG 923
> mmu:75710 Rbm12, 5730420G12Rik, 9430070C08Rik, AI852903, MGC30712,
MGC38279, SWAN, mKIAA0765; RNA binding motif protein
12
Length=992
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query 79 LRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKEKL 138
L+GLP+ + V++FF++ DI DS+ + +G+ G +VE + A AA +
Sbjct 434 LKGLPFEAENKHVIDFFKK--LDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR- 490
Query 139 HRKYLG 144
H++Y+G
Sbjct 491 HKQYMG 496
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query 75 TVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA 134
T++K++ +P+T + +++++FF +G+ + SV L G G A V A AA
Sbjct 916 TIIKVQNMPFTVSIDEILDFF--YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 973
Query 135 KEKLHRKYLG 144
L+ + +G
Sbjct 974 VIDLNDRPIG 983
> mmu:77604 C430048L16Rik, AV299215, MGC91091, Rbm12bb; RIKEN
cDNA C430048L16 gene
Length=834
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query 77 LKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKE 136
L LRGLP+ ++DV FF + +D V+L DGR NG A V+ A
Sbjct 156 LFLRGLPYLVNEDDVRVFFS----GLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGL- 210
Query 137 KLHRKYLG 144
K HR ++G
Sbjct 211 KCHRSFMG 218
Score = 28.9 bits (63), Expect = 5.0, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query 79 LRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKEKL 138
+ LP+ N++++FF HG+ + DSV + +G G A V +T+ A +A + L
Sbjct 762 ISNLPFKANANEILDFF--HGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSAVKDL 819
Query 139 HRKYLG 144
+ +G
Sbjct 820 SGRPVG 825
> mmu:72397 Rbm12b, 3000004N20Rik, Rbm12ba; RNA binding motif
protein 12B
Length=836
Score = 37.4 bits (85), Expect = 0.014, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query 77 LKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKE 136
L LRGLP+ ++DV FF + +D V+L DGR NG A V+ A
Sbjct 156 LFLRGLPYLVNEDDVRVFFS----GLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGL- 210
Query 137 KLHRKYLG 144
K HR ++G
Sbjct 211 KCHRSFMG 218
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query 77 LKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKE 136
+K+ LP+ +++++FF HG+ + DSV L G G A V +T+ A AA +
Sbjct 762 VKISNLPFKANASEILDFF--HGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEALAAVK 819
Query 137 KLHRKYLG 144
L + +G
Sbjct 820 DLSGRPVG 827
> bbo:BBOV_III001020 17.m07117; hypothetical protein
Length=837
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query 76 VLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAK 135
+L L+GLP+ C ++D++++ + + V+L +G G AYV + + D
Sbjct 144 LLYLKGLPYDCVESDILDWLSSY----SIVDVILIKNEEGCFTGDAYVRCSTLSERDRVH 199
Query 136 EKLHRKYLG 144
++ KYLG
Sbjct 200 REMSGKYLG 208
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 0/35 (0%)
Query 6 TGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFR 40
TG+AYV + RD R + G+ +G R+I ++R
Sbjct 182 TGDAYVRCSTLSERDRVHREMSGKYLGLRYIPIYR 216
> hsa:389677 RBM12B, MGC:33837; RNA binding motif protein 12B
Length=1001
Score = 37.0 bits (84), Expect = 0.024, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query 77 LKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKE 136
L LRGLP+ ++DV FF + +D V+ DGR NG A V+ A
Sbjct 157 LFLRGLPYLVNEDDVRVFFS----GLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGL- 211
Query 137 KLHRKYLG 144
K HR ++G
Sbjct 212 KCHRSFMG 219
Score = 32.7 bits (73), Expect = 0.37, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query 74 LTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADA 133
+T +K+ LP+ N++++FF HG+ I DSV + G G A V + + A A
Sbjct 924 VTPIKIMNLPFKANVNEILDFF--HGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMA 981
Query 134 AKEKLHRKYLG 144
A + L+ + +G
Sbjct 982 AIKDLNDRPVG 992
> xla:494769 rbm19; RNA binding motif protein 19; K14787 multiple
RNA-binding domain-containing protein 1
Length=920
Score = 35.4 bits (80), Expect = 0.055, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query 6 TGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKDGR 65
TG +V++ S + A++ + MG R+IEVFR + ++Q + +D +
Sbjct 318 TGYVFVDLSSEEEVQKALKR-NKDYMGGRYIEVFRDNYTK-SPSVQSKAESRPWEQRDKQ 375
Query 66 DADVKGLNLT-VLKLRGLPWTCTDNDVVNFFQEHG 99
+ + L+ + L +R LP++CT++D+ F ++G
Sbjct 376 ELQQEDLSESGRLFVRNLPYSCTEDDLDKLFSKYG 410
> xla:379683 rbm12, MGC68861, SWAN; RNA binding motif protein
12
Length=877
Score = 35.0 bits (79), Expect = 0.078, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 22/156 (14%)
Query 1 SAKRVTGEAYVNV-HSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVM-- 57
S + TGE ++ + D + R H + MG R+++V + ++AM ++ ++
Sbjct 466 SNGKATGEGFLEFRNEEDYKSALCR--HKQYMGNRFVQVHPIT----KKAMLEKIDMIHK 519
Query 58 ---SSGTKDGRDA------DVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVV 108
S + +DA D G L L LP++ D+ +FF GF I + V
Sbjct 520 KMQSYNYGEHKDAPLDAEFDKHGPRLWG-HLSNLPYSIMRKDISHFFISEGFAIDENFVQ 578
Query 109 LGVAVDGRMNGIAYVELTDAATADAAK-EKLHRKYL 143
L +G+ G A V+ + DA K E+LHRK L
Sbjct 579 LLTDNNGQCIGQALVQFR--SEDDARKSERLHRKKL 612
Score = 34.7 bits (78), Expect = 0.096, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query 79 LRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKEKL 138
L+GLP+ + V++FF++ +I DS+ + +G+ G ++E + +A +
Sbjct 434 LKGLPYEAENKHVIDFFKK--LNIVEDSIYIAYGSNGKATGEGFLEFRNEEDYKSALCR- 490
Query 139 HRKYLG 144
H++Y+G
Sbjct 491 HKQYMG 496
Score = 31.6 bits (70), Expect = 0.82, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query 75 TVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA 134
TV++++ +P+T T +++++FF +G+ + SV L + G G A V A AA
Sbjct 801 TVIRVQNMPFTVTVDEILDFF--YGYQLIPGSVCLKFSDKGMPTGEAMVAFESRDEAMAA 858
Query 135 KEKLHRKYLG 144
L+ + +G
Sbjct 859 VVDLNERPIG 868
> cel:T23F6.4 rbd-1; RBD (RNA binding domain) protein family member
(rbd-1); K14787 multiple RNA-binding domain-containing
protein 1
Length=872
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query 75 TVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAA 134
T L ++ LP TCT+ + FF+++G + L +G+ G A+V D +A A
Sbjct 3 TRLIVKNLPSTCTEQQLRKFFEKYG---QISDASLKYTKEGKFRGFAFVGFLDEGSASNA 59
Query 135 KEKLHRKYL 143
K ++ +
Sbjct 60 LAKSNQTFF 68
> ath:AT5G08695 nucleic acid binding / nucleotide binding
Length=690
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query 64 GRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGV-----------A 112
R DVK + +L ++ LP+ T+ ++ F++ G LD +VL A
Sbjct 410 ARKGDVKNRSKHILLVKHLPFASTEKELAQMFRKFG---SLDKIVLPPTKTMALVVFLEA 466
Query 113 VDGR--MNGIAYVELTDAA 129
+ R MNG+AY DA
Sbjct 467 AEARAAMNGLAYTRYKDAP 485
> tpv:TP03_0737 hypothetical protein
Length=968
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 0/41 (0%)
Query 6 TGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDF 46
TG+AYV + +RD + + + +G R+I+VFR S +
Sbjct 218 TGDAYVRCVNIQVRDKVAKEMENKRIGARYIQVFRVSENAY 258
> cpv:cgd1_3530 Gbp1/Gbp2p-like single stranded G-strand telomeric
DNA-binding protein
Length=198
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query 81 GLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKEKLH 139
L W T D+ F E G L+S + DGR GIA + TD A A EKL+
Sbjct 128 NLAWKTTQEDLAKAFNEIG---PLESCEVFYFEDGRSRGIATIVFTDPNHAQLAVEKLN 183
> ath:AT5G53680 RNA recognition motif (RRM)-containing protein
Length=169
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query 74 LTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADA 133
T + + GLPWT ++NFF+ G I ++ VV D R G +V DA +A
Sbjct 12 FTKIYVGGLPWTTRKEGLINFFKRFGEIIHVN-VVCDRETD-RSQGYGFVTFKDAESATR 69
Query 134 A 134
A
Sbjct 70 A 70
> dre:558581 sart3, si:ch211-191d15.4, wu:fc51h03; squamous cell
carcinoma antigen recognised by T cells 3
Length=951
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query 79 LRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKEKL 138
+ GLP++ T + + +EHG + ++ + G+ G+AYVE D A A A K+
Sbjct 789 ISGLPYSATKETLEDLCKEHG---TIRAIRIVTNRSGKSKGLAYVEFEDEAQASQAVLKM 845
> xla:398766 rbm12b, MGC68792; RNA binding motif protein 12B
Length=654
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query 79 LRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKEKL 138
L GLP++ ++ DV +FF HGF + V V +G +G AYV+ A+ AK L
Sbjct 161 LCGLPYSTSELDVKDFF--HGFHV--VDVHFSVRSNGARDGNAYVKF---ASVQDAKASL 213
Query 139 HRKY 142
R Y
Sbjct 214 SRDY 217
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query 77 LKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATADAAKE 136
++L+ +P+T T ++++FF +G+++ DS V +D G A V + + A AA
Sbjct 582 IRLKNVPYTATIENILDFF--YGYNMVPDS----VEMDYISKGTAIVHMENYDVAVAAVN 635
Query 137 KLHRKYLG 144
+L+ + +G
Sbjct 636 ELNERPIG 643
> mmu:17975 Ncl, B530004O11Rik, C23, D0Nds28, D1Nds28, Nucl; nucleolin;
K11294 nucleolin
Length=707
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query 17 DMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRR-VAVMSSGTK----DGRDADVKG 71
D+ V VRT R G V SAED E+A++ + V + K GRD+
Sbjct 337 DLAVVDVRTGTNRKFG----YVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVR 392
Query 72 LNLTVLKLRGLPWTCTDNDVVNFFQEHGFDIGLDSVVLGVAVDGRMNGIAYVELTDAATA 131
T+L + L + T++++ F E +I L V+ DG+ GIAY+E A A
Sbjct 393 AARTLLA-KNLSFNITEDELKEVF-EDAMEIRL------VSQDGKSKGIAYIEFKSEADA 444
Query 132 DAAKEK 137
+ E+
Sbjct 445 EKNLEE 450
Lambda K H
0.320 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2814663556
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
Posted date: Sep 16, 2011 8:45 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40