bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_966 164,496 sequences; 82,071,388 total letters Query= Eace_2115_orf1 Length=116 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_097530 DNA-directed RNA polymerase I subunit RPA2, ... 169 2e-42 cpv:cgd1_2770 RNA polymerase 1 beta subunit ; K03002 DNA-direc... 108 3e-24 bbo:BBOV_II001980 18.m06155; DNA-directed RNA polymerase, beta... 78.6 5e-15 tpv:TP04_0334 DNA-directed RNA polymerase subunit beta (EC:2.7... 75.9 3e-14 sce:YPR010C RPA135, RPA2, RRN2, SRP3; A135 (EC:2.7.7.6); K0300... 61.2 8e-10 cel:F14B4.3 hypothetical protein; K03002 DNA-directed RNA poly... 51.6 6e-07 ath:AT1G29940 NRPA2; NRPA2; DNA binding / DNA-directed RNA pol... 48.9 4e-06 xla:379695 polr1b, MGC68946; polymerase (RNA) I polypeptide B,... 46.6 2e-05 dre:325603 polr1b, MGC113960, MGC158198, MGC192771, MGC66298, ... 45.4 4e-05 mmu:20017 Polr1b, 128kDa, D630020H17Rik, RPA116, RPA135, RPA2,... 43.9 1e-04 hsa:84172 POLR1B, FLJ10816, FLJ21921, MGC131780, RPA135, RPA2,... 43.5 2e-04 pfa:PF11_0358 DNA-directed RNA polymerase 1, subunit 2, putati... 37.7 0.009 ath:AT2G26460 RED family protein; K13109 IK cytokine 29.3 3.6 > tgo:TGME49_097530 DNA-directed RNA polymerase I subunit RPA2, putative (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1388 Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 80/113 (70%), Positives = 95/113 (84%), Gaps = 0/113 (0%) Query 4 KIPPESMDAFSYQEVVLPGQILASVLKDALFAALIKLRTQYMMELRQVKAAGHDPTLVIS 63 KI ES+D+F+YQEVVLPGQILASVLKDALF+ L K+R Y+ E+R +K +G+DPT I Sbjct 415 KISAESLDSFAYQEVVLPGQILASVLKDALFSCLAKIRLHYLQEIRMLKNSGNDPTAAIY 474 Query 64 SIKFFDAATERCASEIGHKINYFMATGNIRTTQLDLQQLSGWTVTADRLNLNR 116 S KFFD AT+RC EI K++YFMATGNIRTTQLDLQQLSGWTVTADRLN++R Sbjct 475 SNKFFDLATDRCCPEIAQKLSYFMATGNIRTTQLDLQQLSGWTVTADRLNVHR 527 > cpv:cgd1_2770 RNA polymerase 1 beta subunit ; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1281 Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 51/117 (43%), Positives = 79/117 (67%), Gaps = 4/117 (3%) Query 4 KIPPESMDAFSYQEVVLPGQILASVLKDALFAALIKLRTQYMMELR----QVKAAGHDPT 59 +I ES+D+F+YQE++ PG + +++ KDA+F+ L K+R+ Y++E+R + + Sbjct 373 EIREESIDSFAYQELLSPGNLYSALFKDAIFSFLQKIRSTYLIEIRSKSGEKNKESKNGV 432 Query 60 LVISSIKFFDAATERCASEIGHKINYFMATGNIRTTQLDLQQLSGWTVTADRLNLNR 116 ++ +F + + S I ++ YFMATGN++TTQLDLQQLSGWTV ADRLN NR Sbjct 433 NLLRDTAYFKSVLSKNISMIPKRLQYFMATGNVKTTQLDLQQLSGWTVVADRLNFNR 489 > bbo:BBOV_II001980 18.m06155; DNA-directed RNA polymerase, beta subunit; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1283 Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 23/136 (16%) Query 4 KIPPESMDAFSYQEVVLPGQILASVLKDALFAALIKLRTQYMMELRQV------KAAGHD 57 +I E+ D+F++QE++LPGQI + +LK++L+ AL+K+R+ Y EL ++ A H Sbjct 370 EIQTENYDSFAFQELLLPGQIYSCILKESLYVALLKIRSIYHAELLELCKNISGDATRHS 429 Query 58 PTLVIS-----------------SIKFFDAATERCASEIGHKINYFMATGNIRTTQLDLQ 100 +I + F A E+ AS+I K++ F+ATGN +L Sbjct 430 KRRLIDVDLQSHEQKELLEKLLEKPELFSYAVEKVASDIPKKLHSFLATGNATNMHFELT 489 Query 101 QLSGWTVTADRLNLNR 116 Q SG TV A+R+N +R Sbjct 490 QSSGLTVVAERINYHR 505 > tpv:TP04_0334 DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1235 Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 25/137 (18%) Query 5 IPPESMDAFSYQEVVLPGQILASVLKDALFAALIKLRTQYMMEL--------------RQ 50 I ES D+F++QE++LPGQ + +LK++L+ +L ++RT Y +E+ R Sbjct 359 IQSESYDSFAFQELLLPGQSYSCILKESLYLSLTRIRTVYNLEINNFLNHLKGKRGFKRN 418 Query 51 VKAAGHDPTL-----------VISSIKFFDAATERCASEIGHKINYFMATGNIRTTQLDL 99 G L ++S+ F+ A + A EI K+++F++TGN T +L Sbjct 419 YAGVGKLENLDQDLEEEMVRKFMNSVNLFNFAINKVAPEITKKVHHFLSTGNAFNTHYEL 478 Query 100 QQLSGWTVTADRLNLNR 116 Q +G+ + DR+N +R Sbjct 479 NQNTGFALVLDRINYHR 495 > sce:YPR010C RPA135, RPA2, RRN2, SRP3; A135 (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1203 Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 7/117 (5%) Query 1 ICWKIPPESMDAFSYQEVVLPGQILASVLKDALFAALIKLRTQYMMELRQVKAAGHDPTL 60 + + P++ DA +QEV+L G + +LK+ + L + Q M++ + A + Sbjct 385 VAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMA------I 438 Query 61 VISSIKFFDAATERCASEIGHKINYFMATGN-IRTTQLDLQQLSGWTVTADRLNLNR 116 ++ R IG K+ YF++TGN + + LDLQQ+SG+TV A+++N R Sbjct 439 NFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYR 495 > cel:F14B4.3 hypothetical protein; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1127 Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 12/110 (10%) Query 7 PESMDAFSYQEVVLPGQILASVLKDAL--FAALIKLRTQYMMELRQVKAAGHDPTLVISS 64 PE+ D +QE + G IL +L++ + +++ + +YM + +++S Sbjct 335 PETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSSRKD---------FILTS 385 Query 65 IKFFDAATERCASEIGHKINYFMATGNIRT-TQLDLQQLSGWTVTADRLN 113 A EI + YF+ATGN+ T L LQQ SG++V A+R+N Sbjct 386 AAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERIN 435 > ath:AT1G29940 NRPA2; NRPA2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1178 Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 5/111 (4%) Query 7 PESMDAFSYQEVVLPGQILASVLKDALFAALIKLRTQYMMELRQVKAAGHDPTLVISSIK 66 P++ D+ QE+++PG ++ LK+ L L K ++ EL + +L K Sbjct 360 PDNPDSLQNQEILVPGHVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESLA-DVKK 418 Query 67 FFDAATERCASEIGHKINYFMATGNIRT-TQLDLQQLSGWTVTADRLNLNR 116 + R IG I + TG ++T + LDLQQ +G+TV A+RLN R Sbjct 419 LINKNPPR---SIGTSIETLLKTGALKTQSGLDLQQRAGYTVQAERLNFLR 466 > xla:379695 polr1b, MGC68946; polymerase (RNA) I polypeptide B, 128kDa; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1134 Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 23/116 (19%) Query 8 ESMDAFSYQEVVLPGQILASVLKDALFAALIKLRTQYMMELRQVKAAGHDPTLVISSIKF 67 E+ D+ YQEV+ PGQ+L LK+ + + L+ ++ L + K Sbjct 364 ENPDSLMYQEVLTPGQLLLMFLKEKMESWLLGVKLN----------------LDKRAHKL 407 Query 68 FDAATERCA------SEIGHKINYFMATGNIRT-TQLDLQQLSGWTVTADRLNLNR 116 D TE S++ Y +ATGN+R+ T L + Q SG V AD+LN R Sbjct 408 VDLTTETMGKILTSTSDLTKLCEYLLATGNLRSKTGLGMLQSSGLVVVADKLNFIR 463 > dre:325603 polr1b, MGC113960, MGC158198, MGC192771, MGC66298, wu:fc91a05, zgc:66298; polymerase (RNA) I polypeptide B (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1132 Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 11/110 (10%) Query 8 ESMDAFSYQEVVLPGQILASVLKDALFAALIKLRTQYMMELRQVKAAGHDPTLVISSIKF 67 E+ D+ + EV+ PGQ+ LK+ + L+ ++ +E + + G P S K Sbjct 363 ENPDSPMFHEVLTPGQLYLMFLKEKMEGWLVSVKLA--LEKKPQRVGGLTPD---SMTKL 417 Query 68 FDAATERCASEIGHKINYFMATGNIRT-TQLDLQQLSGWTVTADRLNLNR 116 F+ T ++ Y +ATGN+ + T L + Q SG V AD+LN R Sbjct 418 FNMGT-----DLTKAFEYLLATGNLMSKTGLGMLQNSGLCVVADKLNFIR 462 > mmu:20017 Polr1b, 128kDa, D630020H17Rik, RPA116, RPA135, RPA2, Rpo1-2; polymerase (RNA) I polypeptide B (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1135 Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 10/110 (9%) Query 8 ESMDAFSYQEVVLPGQILASVLKDALFAALIKLRTQYMMELRQVKAAGHDPTLVISSIKF 67 ++ D+ QEV+ PGQ+ LK+ + L+ ++ ++ + ++ L +K Sbjct 364 DNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNENL----MKI 419 Query 68 FDAATERCASEIGHKINYFMATGNIRT-TQLDLQQLSGWTVTADRLNLNR 116 F T E+ Y +ATGN+R+ T L Q SG V AD+LN R Sbjct 420 FSMGT-----ELTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFLR 464 > hsa:84172 POLR1B, FLJ10816, FLJ21921, MGC131780, RPA135, RPA2, Rpo1-2; polymerase (RNA) I polypeptide B, 128kDa (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1079 Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 10/110 (9%) Query 8 ESMDAFSYQEVVLPGQILASVLKDALFAALIKLRTQYMMELRQVKAAGHDPTLVISSIKF 67 ++ D+ QEV+ PGQ+ LK+ L L+ ++ + + ++ + + L ++ Sbjct 308 DNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNL----MRI 363 Query 68 FDAATERCASEIGHKINYFMATGNIRT-TQLDLQQLSGWTVTADRLNLNR 116 F ++ Y ATGN+R+ T L L Q SG V AD+LN R Sbjct 364 FTMGI-----DLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIR 408 > pfa:PF11_0358 DNA-directed RNA polymerase 1, subunit 2, putative; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1517 Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Query 73 ERCAS--EIGHKINYFMATGNIRTTQLDLQQLSGWTVTADRLN 113 E C S I +F TGNI + L QQ SGW + AD +N Sbjct 540 ENCKSFSNTSSAILFFFKTGNISSENLHYQQKSGWVIAADEIN 582 > ath:AT2G26460 RED family protein; K13109 IK cytokine Length=585 Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%) Query 3 WKIPPESMDAFSYQEVVLPGQILASVLKDALFAALIKLRTQYMMELRQVKAAGHDPTLVI 62 +++ PE+ +V+L Q+++ KD ++ K Q + +LR+ A DPT V Sbjct 406 YEVQPET-------DVLLDPQLMSQEEKDRGLGSVFKRDDQRLQQLRESDAREKDPTFVS 458 Query 63 SS 64 S Sbjct 459 ES 460 Lambda K H 0.323 0.134 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2037741960 Database: egene_temp_file_orthology_annotation_similarity_blast_database_966 Posted date: Sep 16, 2011 8:45 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40