bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
164,496 sequences; 82,071,388 total letters
Query= Eace_2094_orf4
Length=80
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_025260 DNA-directed RNA polymerase II largest subun... 104 6e-23
pfa:PFC0805w DNA-directed RNA polymerase II, putative; K03006 ... 93.6 1e-19
bbo:BBOV_I003360 19.m02399; DNA-directed RNA polymerase II lar... 93.6 2e-19
cpv:cgd3_2620 DNA-directed RNA polymerase,possible RNA polymer... 89.7 2e-18
sce:YDL140C RPO21, RPB1, RPB220, SUA8; B220 (EC:2.7.7.6); K030... 89.4 3e-18
tpv:TP03_0185 DNA-directed RNA polymerase II largest subunit (... 87.8 7e-18
dre:100334761 DNA-directed RNA polymerase II A-like 82.8 2e-16
dre:553347 polr2a, im:7136071; polymerase (RNA) II (DNA direct... 81.6 5e-16
cel:F36A4.7 ama-1; AMAnitin resistant family member (ama-1); K... 80.1 2e-15
mmu:20020 Polr2a, 220kDa, Rpb1, Rpo2-1; polymerase (RNA) II (D... 79.0 3e-15
hsa:5430 POLR2A, MGC75453, POLR2, POLRA, RPB1, RPBh1, RPO2, RP... 79.0 3e-15
pfa:PF13_0150 DNA-directed RNA polymerase 3 largest subunit (E... 76.6 2e-14
ath:AT4G35800 NRPB1; NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); ... 70.9 9e-13
sce:YOR116C RPO31, RPC1, RPC160; C160 (EC:2.7.7.6); K03018 DNA... 66.2 2e-11
cel:C42D4.8 rpc-1; RNA Polymerase, Class III (C) family member... 66.2 3e-11
mmu:218832 Polr3a, 9330175N20Rik, BC053071, MGC62420, RPC1, RP... 63.5 2e-10
tpv:TP04_0648 DNA-directed RNA polymerase III largest subunit ... 63.2 2e-10
bbo:BBOV_III007400 17.m07648; RNA polymerase Rpb1, domain cont... 62.8 2e-10
ath:AT5G60040 NRPC1; NRPC1; DNA binding / DNA-directed RNA pol... 62.4 4e-10
hsa:11128 POLR3A, RPC1, RPC155, hRPC155; polymerase (RNA) III ... 62.0 4e-10
sce:YOR341W RPA190, RRN1; A190 (EC:2.7.7.6); K02999 DNA-direct... 62.0 5e-10
cpv:cgd6_3290 DNA-directed RNA polymerase III C1 subunit ; K03... 61.2 7e-10
dre:100334693 mCG7865-like 60.8 1e-09
xla:379994 polr3a, MGC52746, rpc155; polymerase (RNA) III (DNA... 57.8 8e-09
cel:Y48E1A.1 hypothetical protein; K02999 DNA-directed RNA pol... 57.4 1e-08
tgo:TGME49_106290 DNA-directed RNA polymerase III largest subu... 54.7 7e-08
ath:AT3G57660 NRPA1; NRPA1; DNA binding / DNA-directed RNA pol... 54.3 9e-08
tpv:TP01_0809 RNA polymerase large subunit; K02999 DNA-directe... 53.9 1e-07
cpv:cgd5_730 DNA-directed RNA polymerase I ; K02999 DNA-direct... 49.7 3e-06
bbo:BBOV_IV009600 23.m06317; DNA directed RNA polymerase (EC:2... 49.3 3e-06
tgo:TGME49_044880 DNA-directed RNA polymerase I largest subuni... 48.5 5e-06
mmu:20019 Polr1a, 194kDa, 3010014K16Rik, RPA194, Rpo1-4, mRPA1... 46.2 3e-05
xla:398274 polr1a; polymerase (RNA) I polypeptide A, 194kDa; K... 45.8 3e-05
hsa:25885 POLR1A, A190, DKFZp586M0122, FLJ21915, MGC87965, RPA... 45.8 3e-05
pfa:PFE0465c RNA polymerase I; K02999 DNA-directed RNA polymer... 45.4 4e-05
dre:327078 polr1a, cb934, fa26a03, sb:cb935, wu:fa26a03; polym... 43.9 1e-04
ath:AT1G63020 NRPD1A; NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DN... 38.1 0.008
ath:AT2G40030 NRPD1B; NRPD1B; DNA binding / DNA-directed RNA p... 34.7 0.069
hsa:79791 FBXO31, DKFZp434B027, DKFZp434J1815, FBX14, FBXO14, ... 28.5 4.8
> tgo:TGME49_025260 DNA-directed RNA polymerase II largest subunit,
putative (EC:2.7.7.6 3.5.1.16); K03006 DNA-directed RNA
polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1892
Score = 104 bits (260), Expect = 6e-23, Method: Composition-based stats.
Identities = 49/59 (83%), Positives = 53/59 (89%), Gaps = 0/59 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIR 59
ARTVITGDP LPID VGVPKSIAMTLTYPEFVT LNI +L++LVK GP +WPGAKYVIR
Sbjct 356 ARTVITGDPMLPIDTVGVPKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDWPGAKYVIR 414
> pfa:PFC0805w DNA-directed RNA polymerase II, putative; K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=2457
Score = 93.6 bits (231), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/59 (72%), Positives = 51/59 (86%), Gaps = 0/59 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIR 59
ARTVITGDPNL ID +GVPKS+AMTLT+ E VT LN + LK+LV++GP EWPGAKY+IR
Sbjct 382 ARTVITGDPNLNIDYIGVPKSVAMTLTFCETVTPLNYDNLKKLVERGPYEWPGAKYIIR 440
> bbo:BBOV_I003360 19.m02399; DNA-directed RNA polymerase II largest
subunit (EC:2.7.7.6); K03006 DNA-directed RNA polymerase
II subunit RPB1 [EC:2.7.7.6]
Length=1746
Score = 93.6 bits (231), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/59 (71%), Positives = 51/59 (86%), Gaps = 0/59 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIR 59
ARTVITGDPNLP+DV+GVPKSIAMTLT+ E VT LN+ L++ V+ GP EWPGAKY++R
Sbjct 350 ARTVITGDPNLPVDVIGVPKSIAMTLTFSETVTPLNLENLRKKVEMGPHEWPGAKYIVR 408
> cpv:cgd3_2620 DNA-directed RNA polymerase,possible RNA polymerase
A/beta'/A'' subunit, long PHYSPTS repeat ; K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1902
Score = 89.7 bits (221), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/59 (72%), Positives = 49/59 (83%), Gaps = 0/59 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIR 59
ARTVITGDPNL +D VGVP SIAMTLTYPE VT NI +LKELV++GP EWPGA +I+
Sbjct 350 ARTVITGDPNLAVDQVGVPYSIAMTLTYPEVVTPYNIEELKELVQRGPHEWPGATSIIQ 408
> sce:YDL140C RPO21, RPB1, RPB220, SUA8; B220 (EC:2.7.7.6); K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1733
Score = 89.4 bits (220), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/59 (72%), Positives = 49/59 (83%), Gaps = 0/59 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIR 59
ARTVI+GDPNL +D VGVPKSIA TLTYPE VT NI++L +LV+ GP E PGAKYVIR
Sbjct 349 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIR 407
> tpv:TP03_0185 DNA-directed RNA polymerase II largest subunit
(EC:2.7.7.6); K03006 DNA-directed RNA polymerase II subunit
RPB1 [EC:2.7.7.6]
Length=1681
Score = 87.8 bits (216), Expect = 7e-18, Method: Composition-based stats.
Identities = 40/59 (67%), Positives = 48/59 (81%), Gaps = 0/59 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIR 59
ARTVITGDPN+PID +GVPKSIAMTLT+ E V LN L++ V+ GP +WPGAKY+IR
Sbjct 350 ARTVITGDPNIPIDTIGVPKSIAMTLTFCETVNSLNYESLRKKVETGPHDWPGAKYIIR 408
> dre:100334761 DNA-directed RNA polymerase II A-like
Length=780
Score = 82.8 bits (203), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/59 (64%), Positives = 49/59 (83%), Gaps = 0/59 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIR 59
ARTVIT DPNL ID VGVP+SIA +T+PE VT NI++L+ELV++G ++PGAKY+IR
Sbjct 360 ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIR 418
> dre:553347 polr2a, im:7136071; polymerase (RNA) II (DNA directed)
polypeptide A; K03006 DNA-directed RNA polymerase II subunit
RPB1 [EC:2.7.7.6]
Length=1972
Score = 81.6 bits (200), Expect = 5e-16, Method: Composition-based stats.
Identities = 38/59 (64%), Positives = 49/59 (83%), Gaps = 0/59 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIR 59
ARTVIT DPNL ID VGVP+SIA +T+PE VT NI++L+ELV++G ++PGAKY+IR
Sbjct 360 ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIR 418
> cel:F36A4.7 ama-1; AMAnitin resistant family member (ama-1);
K03006 DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1852
Score = 80.1 bits (196), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/55 (65%), Positives = 45/55 (81%), Gaps = 0/55 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAK 55
ARTVIT DPNLPID VGVP++IA LT+PE VT N++KL+ELV +G ++PGAK
Sbjct 357 ARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK 411
> mmu:20020 Polr2a, 220kDa, Rpb1, Rpo2-1; polymerase (RNA) II
(DNA directed) polypeptide A (EC:2.7.7.6); K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1932
Score = 79.0 bits (193), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/59 (62%), Positives = 48/59 (81%), Gaps = 0/59 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIR 59
ARTVIT DPNL ID VGVP+SIA +T+ E VT NI++L+ELV++G ++PGAKY+IR
Sbjct 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIR 421
> hsa:5430 POLR2A, MGC75453, POLR2, POLRA, RPB1, RPBh1, RPO2,
RPOL2, RpIILS, hRPB220, hsRPB1; polymerase (RNA) II (DNA directed)
polypeptide A, 220kDa (EC:2.7.7.6 2.7.7.48); K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1970
Score = 79.0 bits (193), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/59 (62%), Positives = 48/59 (81%), Gaps = 0/59 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIR 59
ARTVIT DPNL ID VGVP+SIA +T+ E VT NI++L+ELV++G ++PGAKY+IR
Sbjct 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIR 421
> pfa:PF13_0150 DNA-directed RNA polymerase 3 largest subunit
(EC:2.7.7.6); K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=2356
Score = 76.6 bits (187), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 0/59 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIR 59
+RTVI+ DPN+ ID V +PK IAM LTYPE V NI+KLK L+K G +WPGA Y+I+
Sbjct 363 SRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPGANYIIK 421
> ath:AT4G35800 NRPB1; NRPB1 (RNA POLYMERASE II LARGE SUBUNIT);
DNA binding / DNA-directed RNA polymerase; K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1840
Score = 70.9 bits (172), Expect = 9e-13, Method: Composition-based stats.
Identities = 39/62 (62%), Positives = 44/62 (70%), Gaps = 3/62 (4%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWP---GAKYV 57
ARTVIT DP + ID +GVP SIA+ LTYPE VT NI +LKELV GP P GAKY+
Sbjct 361 ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYI 420
Query 58 IR 59
IR
Sbjct 421 IR 422
> sce:YOR116C RPO31, RPC1, RPC160; C160 (EC:2.7.7.6); K03018 DNA-directed
RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1460
Score = 66.2 bits (160), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 0/59 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIR 59
RTVI+ DPNL ID V VP +A LTYPE VT N +KL+EL+ GP PGA Y+++
Sbjct 377 GRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLLK 435
> cel:C42D4.8 rpc-1; RNA Polymerase, Class III (C) family member
(rpc-1); K03018 DNA-directed RNA polymerase III subunit RPC1
[EC:2.7.7.6]
Length=1400
Score = 66.2 bits (160), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 0/58 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVI 58
RTVI+ DPNL ID VGVP +AMTLT+PE V NI K+++LV G PGA Y++
Sbjct 361 GRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLV 418
> mmu:218832 Polr3a, 9330175N20Rik, BC053071, MGC62420, RPC1,
RPC155; polymerase (RNA) III (DNA directed) polypeptide A (EC:2.7.7.6);
K03018 DNA-directed RNA polymerase III subunit RPC1
[EC:2.7.7.6]
Length=1390
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 0/79 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIRL 60
RTVI+ DPNL ID V VP +A LT+PE V NIN L++LV+ GP PGA ++ +
Sbjct 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQR 424
Query 61 LLLFKALIINPTQETQEQE 79
+ K + +E QE
Sbjct 425 HMQMKRFLKYGNREKMAQE 443
> tpv:TP04_0648 DNA-directed RNA polymerase III largest subunit
(EC:2.7.7.6); K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=1617
Score = 63.2 bits (152), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 0/60 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIRL 60
ARTVI+ DPN+ ID V VP+ IA LT+PE VT NI+ LK+ + G WPGA YV +L
Sbjct 415 ARTVISPDPNVGIDEVVVPEWIARRLTFPERVTKYNIDVLKKAILNGVSVWPGASYVNKL 474
> bbo:BBOV_III007400 17.m07648; RNA polymerase Rpb1, domain containing
protein; K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=1541
Score = 62.8 bits (151), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 40/57 (70%), Gaps = 0/57 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYV 57
ARTVI+ DPN+ +D V VP+ IAM LT+PE VT NI+ +K+ V G WPGA YV
Sbjct 420 ARTVISPDPNVGVDEVVVPEWIAMKLTFPEEVTDSNISIMKKAVLNGVSIWPGATYV 476
> ath:AT5G60040 NRPC1; NRPC1; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding / zinc ion binding; K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1376
Score = 62.4 bits (150), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 0/57 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYV 57
RTVI+ DPNL I VG+P +A LT+PE V+ NI KL++ V+ GP ++PGA+ V
Sbjct 366 GRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNV 422
> hsa:11128 POLR3A, RPC1, RPC155, hRPC155; polymerase (RNA) III
(DNA directed) polypeptide A, 155kDa (EC:2.7.7.6); K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1390
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 0/79 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIRL 60
RTVI+ DPNL ID V VP +A LT+PE V NIN L++LV+ GP PGA ++ +
Sbjct 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQR 424
Query 61 LLLFKALIINPTQETQEQE 79
K + +E QE
Sbjct 425 HTQMKRFLKYGNREKMAQE 443
> sce:YOR341W RPA190, RRN1; A190 (EC:2.7.7.6); K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1664
Score = 62.0 bits (149), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 0/57 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYV 57
AR+VI+ DPN+ + +GVP A+ LTYPE VT NI +L++ V GP +WPGA +
Sbjct 480 ARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQI 536
> cpv:cgd6_3290 DNA-directed RNA polymerase III C1 subunit ; K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1871
Score = 61.2 bits (147), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/59 (52%), Positives = 38/59 (64%), Gaps = 0/59 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIR 59
RTVI+ DPN+ +D V VP IA LTYPE V +NI+ L+E V G WPGA YV +
Sbjct 361 GRTVISPDPNIEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNGHDIWPGACYVYK 419
> dre:100334693 mCG7865-like
Length=299
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 0/79 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIRL 60
RTVI+ DPNL ID V VP +A LTYPE V NI +++LV+ GP PGA ++ +
Sbjct 211 GRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPGANFIQQR 270
Query 61 LLLFKALIINPTQETQEQE 79
+ K + +E QE
Sbjct 271 HMQMKRFLKYGNREKMAQE 289
> xla:379994 polr3a, MGC52746, rpc155; polymerase (RNA) III (DNA
directed) polypeptide A, 155kDa (EC:2.7.7.6); K03018 DNA-directed
RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=489
Score = 57.8 bits (138), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 0/57 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYV 57
RTVI+ DPNL ID V VP +A LT+PE V N+ +++LV+ GP PGA ++
Sbjct 364 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPEIHPGANFI 420
> cel:Y48E1A.1 hypothetical protein; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1737
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 0/57 (0%)
Query 2 RTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVI 58
R+VIT DP L ID +G+P A LT+ E V N+N++K L+++GP + PGA + +
Sbjct 481 RSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPHQHPGANFFV 537
> tgo:TGME49_106290 DNA-directed RNA polymerase III largest subunit,
putative (EC:2.7.7.6); K03018 DNA-directed RNA polymerase
III subunit RPC1 [EC:2.7.7.6]
Length=1746
Score = 54.7 bits (130), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 0/57 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYV 57
RTVI+ DPN + V VP+ +A LT+PE V +NI L+ V KG +WPGA YV
Sbjct 439 GRTVISPDPNANVYEVVVPEWVAKRLTFPERVNRVNIEVLRAAVLKGCSDWPGACYV 495
> ath:AT3G57660 NRPA1; NRPA1; DNA binding / DNA-directed RNA polymerase/
zinc ion binding; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1670
Score = 54.3 bits (129), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 0/55 (0%)
Query 2 RTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKY 56
R+VI+ DP + ++ +G+P A+ LTYPE VT N+ KL+E + GP PGA +
Sbjct 451 RSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATH 505
> tpv:TP01_0809 RNA polymerase large subunit; K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1996
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 0/55 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAK 55
ARTVI D + + +G+P A+ LT PE+VT N+N L++LV GP +PGAK
Sbjct 514 ARTVIAPDCFIDTNQMGMPLKFALELTVPEYVTKYNVNFLRKLVINGPKVYPGAK 568
> cpv:cgd5_730 DNA-directed RNA polymerase I ; K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1805
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVIRL 60
ARTVI DP L + +GVP A+ LT PE V N++ + LV+ GP +PGA +L
Sbjct 487 ARTVIGPDPYLDTNEIGVPLMFALNLTIPERVGTHNVSLMANLVENGPNLYPGAN---KL 543
Query 61 LL 62
LL
Sbjct 544 LL 545
> bbo:BBOV_IV009600 23.m06317; DNA directed RNA polymerase (EC:2.7.7.6);
K02999 DNA-directed RNA polymerase I subunit RPA1
[EC:2.7.7.6]
Length=2016
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 0/56 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKY 56
ARTVI D L + +G+P A LT PE VT N+N L++L+ GP +PGA +
Sbjct 546 ARTVIAPDCFLDSNQMGIPLMFATELTVPENVTSYNVNMLRKLLINGPRIYPGANF 601
> tgo:TGME49_044880 DNA-directed RNA polymerase I largest subunit,
putative (EC:2.7.7.49 2.7.7.6); K02999 DNA-directed RNA
polymerase I subunit RPA1 [EC:2.7.7.6]
Length=2768
Score = 48.5 bits (114), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 0/54 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGA 54
ARTV+ D + + VGVP AM L+ PE VT N++ L E+V GP + PGA
Sbjct 638 ARTVLAPDALIATNEVGVPLDFAMKLSIPEKVTPRNVHVLSEMVINGPHKHPGA 691
> mmu:20019 Polr1a, 194kDa, 3010014K16Rik, RPA194, Rpo1-4, mRPA1;
polymerase (RNA) I polypeptide A (EC:2.7.7.6); K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1717
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 0/58 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVI 58
AR+VI D + + +G+P A LTYP+ VT N+ +L++ V GP PGA VI
Sbjct 448 ARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 505
> xla:398274 polr1a; polymerase (RNA) I polypeptide A, 194kDa;
K02999 DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1730
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 0/58 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVI 58
AR+VI D + + +G+P A LTYP+ VT N+ +L++ V GP PGA VI
Sbjct 447 ARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRKAVLNGPNVHPGASMVI 504
> hsa:25885 POLR1A, A190, DKFZp586M0122, FLJ21915, MGC87965, RPA1,
RPA194, RPO1-4, RPO14; polymerase (RNA) I polypeptide A,
194kDa (EC:2.7.7.6); K02999 DNA-directed RNA polymerase I
subunit RPA1 [EC:2.7.7.6]
Length=1720
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 0/58 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVI 58
AR+VI D + + +G+P A LTYP+ VT N+ +L++ V GP PGA VI
Sbjct 441 ARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVI 498
> pfa:PFE0465c RNA polymerase I; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=2914
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 0/54 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGA 54
ARTVI+ D + + +G+P A LT E++T N +K+L++ GP +PGA
Sbjct 739 ARTVISPDTFIETNQIGMPIEFAKVLTIDEYITQNNFTYIKKLIENGPNIYPGA 792
> dre:327078 polr1a, cb934, fa26a03, sb:cb935, wu:fa26a03; polymerase
(RNA) I polypeptide A; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1693
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 0/58 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELVKKGPLEWPGAKYVI 58
AR+VI D + + +G+P A LTYP+ VT N+ ++++ V GP PGA V+
Sbjct 435 ARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQAVLNGPNIHPGATMVV 492
> ath:AT1G63020 NRPD1A; NRPD1A (NUCLEAR RNA POLYMERASE D 1A);
DNA binding / DNA-directed RNA polymerase
Length=1453
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 0/39 (0%)
Query 2 RTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKL 40
RTV+ GDP+L ++ +G+P+SIA L E + N +L
Sbjct 323 RTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERL 361
> ath:AT2G40030 NRPD1B; NRPD1B; DNA binding / DNA-directed RNA
polymerase
Length=1976
Score = 34.7 bits (78), Expect = 0.069, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 0/44 (0%)
Query 1 ARTVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELV 44
+R+VITGD ++ VG+P IA +T+ E V+ N L++LV
Sbjct 324 SRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLV 367
> hsa:79791 FBXO31, DKFZp434B027, DKFZp434J1815, FBX14, FBXO14,
FLJ22477, Fbx31, MGC15419, MGC9527, pp2386; F-box protein
31; K10308 F-box protein 31
Length=539
Score = 28.5 bits (62), Expect = 4.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 0/42 (0%)
Query 3 TVITGDPNLPIDVVGVPKSIAMTLTYPEFVTHLNINKLKELV 44
T ITGDPN+P V + + P+ N N+L +V
Sbjct 329 TKITGDPNIPAGQQTVEIDLRHRIQLPDLENQRNFNELSRIV 370
Lambda K H
0.318 0.138 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2058492688
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
Posted date: Sep 16, 2011 8:45 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40