bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_966 164,496 sequences; 82,071,388 total letters Query= Eace_0911_orf1 Length=110 Score E Sequences producing significant alignments: (Bits) Value pfa:MAL7P1.206 DNA mismatch repair protein, putative 70.9 9e-13 tgo:TGME49_061000 DNA mismatch repair protein, putative ; K087... 64.3 8e-11 pfa:PF14_0254 DNA mismatch repair protein Msh2p, putative; K08... 53.1 2e-07 ath:AT3G18524 MSH2; MSH2 (MUTS HOMOLOG 2); ATP binding / damag... 50.4 1e-06 tgo:TGME49_090640 DNA mismatch repair protein, putative (EC:3.... 50.1 2e-06 bbo:BBOV_I004430 19.m02191; DNA repair protein; K08737 DNA mis... 44.3 9e-05 sce:YCR092C MSH3; Mismatch repair protein, forms dimers with M... 43.1 2e-04 tpv:TP01_0185 DNA repair protein; K08737 DNA mismatch repair p... 42.7 3e-04 eco:b2733 mutS, ant, ECK2728, fdv, JW2703, plm; methyl-directe... 42.4 3e-04 hsa:4437 MSH3, DUP, MGC163306, MGC163308, MRP1; mutS homolog 3... 42.4 4e-04 ath:AT3G20475 MSH5; MSH5 (MUTS-HOMOLOGUE 5); ATP binding / dam... 42.0 5e-04 ath:AT4G02070 MSH6; MSH6 (MUTS HOMOLOG 6); damaged DNA binding... 40.4 0.001 ath:AT4G25540 MSH3; MSH3 (Arabidopsis homolog of DNA mismatch ... 40.0 0.002 sce:YOL090W MSH2, PMS5; Msh2p; K08735 DNA mismatch repair prot... 38.9 0.004 pfa:PFE0270c DNA repair protein, putative; K08737 DNA mismatch... 38.5 0.005 dre:406845 msh2, wu:fc06b02, wu:fc13e09, zgc:55333; mutS homol... 38.1 0.006 hsa:4439 MSH5, DKFZp434C1615, G7, MGC2939, MUTSH5, NG23; mutS ... 38.1 0.007 mmu:17686 Msh3, D13Em1, Rep-3, Rep3; mutS homolog 3 (E. coli);... 37.7 0.009 mmu:100046843 DNA mismatch repair protein Msh3-like 37.7 0.009 bbo:BBOV_I003810 19.m02277; DNA mismatch repair enzyme; K08735... 37.4 0.011 sce:YDR097C MSH6, PMS3; Msh6p; K08737 DNA mismatch repair prot... 37.4 0.011 cpv:cgd8_370 DNA repair protein ; K08737 DNA mismatch repair p... 36.6 0.019 dre:565400 novel protein similar to vertebrate mutS homolog 3 ... 36.6 0.020 sce:YDL154W MSH5; Msh5p; K08741 DNA mismatch repair protein MSH5 36.2 0.025 tpv:TP01_0456 DNA mismatch repair protein MSH2; K08735 DNA mis... 35.8 0.039 mmu:17687 Msh5, G7, Mut5; mutS homolog 5 (E. coli); K08741 DNA... 35.8 0.039 dre:570030 msh5; mutS homolog 5 (E. coli); K08741 DNA mismatch... 35.0 0.056 hsa:4436 MSH2, COCA1, FCC1, HNPCC, HNPCC1, LCFS2; mutS homolog... 34.7 0.075 mmu:17685 Msh2, AI788990; mutS homolog 2 (E. coli); K08735 DNA... 34.7 0.085 cpv:cgd8_3950 MutS like ABC ATpase involved in DNA repair ; K0... 33.9 0.12 ath:AT3G24495 MSH7; MSH7 (MUTS HOMOLOG 7); ATP binding / damag... 33.1 0.25 cpv:cgd8_3640 niemann-Pick type C1 disease protein/ patched li... 30.8 1.2 cel:H26D21.2 msh-2; MSH (MutS Homolog) family member (msh-2); ... 29.6 2.7 hsa:65267 WNK3, FLJ30437, FLJ42662, KIAA1566, PRKWNK3; WNK lys... 29.3 3.5 dre:559917 mutS homolog 4-like; K08740 DNA mismatch repair pro... 28.9 3.7 pfa:PFC0225c elongation factor (EF-TS), putative; K02357 elong... 28.9 4.0 tgo:TGME49_068390 hypothetical protein 28.9 4.2 dre:100148193 dnah6; dynein, axonemal, heavy chain 6 28.9 cel:Y47G6A.11 msh-6; MSH (MutS Homolog) family member (msh-6);... 28.9 4.8 dre:559325 lysosomal trafficking regulator-like 28.5 6.2 hsa:4438 MSH4; mutS homolog 4 (E. coli); K08740 DNA mismatch r... 28.1 6.6 mmu:71909 Haus5, 2310022K01Rik; HAUS augmin-like complex, subu... 27.7 8.2 sce:YHR114W BZZ1, LSB7; Bzz1p 27.7 8.7 dre:571240 transmembrane channel-like gene family 2-like 27.7 8.9 xla:380199 syap1, MGC53226; synapse associated protein 1, SAP4... 27.7 9.2 pfa:PF10_0224 dynein heavy chain, putative; K06025 [EC:3.6.4.2] 27.7 9.7 > pfa:MAL7P1.206 DNA mismatch repair protein, putative Length=873 Score = 70.9 bits (172), Expect = 9e-13, Method: Composition-based stats. Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 5/104 (4%) Query 2 EGVHNYHVRAAVCKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQ 61 +GV N HV A + +K+++SFLY++K+G+AD SYGV+VA A LP ++ +A S +L+ Sbjct 749 KGVINNHVGAKIDTEKKKISFLYEIKKGYADKSYGVYVAQIAQLPKSVIHKAFQKSKELE 808 Query 62 QESNNQKRKLQHLDQTEEENKTN-----NNTQDTLKKLRNIISE 100 N K + L QT ++N TN N + LK++ N+ E Sbjct 809 SVENRHYFKKKLLTQTNQQNDTNHTSNYNKSISYLKEIFNVTHE 852 > tgo:TGME49_061000 DNA mismatch repair protein, putative ; K08735 DNA mismatch repair protein MSH2 Length=936 Score = 64.3 bits (155), Expect = 8e-11, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query 1 VEGVHNYHVRAAVCKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQL 60 V GV N HV AAV ++ +Q++FLY ++ G D S+GVHVA FAGLP + RA S +L Sbjct 747 VPGVSNLHVSAAVNRETQQLAFLYRLQSGCVDQSFGVHVAGFAGLPATVVERARQKSAEL 806 Query 61 QQ-ESNNQKRK 70 + E Q+R+ Sbjct 807 EAVERGEQERR 817 > pfa:PF14_0254 DNA mismatch repair protein Msh2p, putative; K08735 DNA mismatch repair protein MSH2 Length=811 Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 3/111 (2%) Query 2 EGVHNYHVRAAVCKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQ 61 EGV N HV + K+K+++ FLY++K+G ++ SYGV+VA A LP + +A +L+ Sbjct 686 EGVINRHVETTIDKEKKKICFLYEIKDGASNKSYGVNVAEIAKLPKEVIQKAYEKVEELE 745 Query 62 QESNNQ--KRKLQHLDQTEEENKTNNNTQDTLKKLRNIISEAFAAQTPQLF 110 N K KL ++D + ++ K+++ I F++ F Sbjct 746 SAENKYYLKEKL-NIDTSASADENYKMKISNYMKIKDEIHYLFSSTNENEF 795 > ath:AT3G18524 MSH2; MSH2 (MUTS HOMOLOG 2); ATP binding / damaged DNA binding / mismatched DNA binding / protein binding; K08735 DNA mismatch repair protein MSH2 Length=937 Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 9/85 (10%) Query 3 GVHNYHVRAAVCKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQ 62 GV N+HV A + + R+++ LY V+ G D S+G+HVA FA P ++ + A + +L+ Sbjct 800 GVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELED 859 Query 63 ES------NNQ---KRKLQHLDQTE 78 S NN+ KRK + D E Sbjct 860 FSPSSMIINNEESGKRKSREDDPDE 884 > tgo:TGME49_090640 DNA mismatch repair protein, putative (EC:3.2.1.3); K08737 DNA mismatch repair protein MSH6 Length=1607 Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 0/66 (0%) Query 4 VHNYHVRAAVCKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQE 63 V N H++AA+ ++++ ++FLY + +G S+G+HVA AG+ P + A S +LQQE Sbjct 1471 VVNVHMKAAINEEQQSLAFLYKLTKGVCPKSHGIHVARLAGIDPRILECAEEKSLRLQQE 1530 Query 64 SNNQKR 69 Q+R Sbjct 1531 VVRQQR 1536 > bbo:BBOV_I004430 19.m02191; DNA repair protein; K08737 DNA mismatch repair protein MSH6 Length=1313 Score = 44.3 bits (103), Expect = 9e-05, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 0/74 (0%) Query 8 HVRAAVCKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQESNNQ 67 H+ A++ K++ ++FLY + G S+G+HVA AG+P +T A +S + Sbjct 1222 HMAASLDDKEKSITFLYKLSLGLCPESHGIHVARLAGIPKHVTDMAEVVSRSYRASKRPI 1281 Query 68 KRKLQHLDQTEEEN 81 K LQ L + +++ Sbjct 1282 KSILQALLEAHKQD 1295 > sce:YCR092C MSH3; Mismatch repair protein, forms dimers with Msh2p that mediate repair of insertion or deletion mutations and removal of nonhomologous DNA ends, contains a PCNA (Pol30p) binding motif required for genome stability; K08736 DNA mismatch repair protein MSH3 Length=1018 Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 6/96 (6%) Query 4 VHNYHVRAAVCKKKRQ----VSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQ 59 + NYH+ +K + V FLY +K+G NSYG++VA A L + +RA +IS + Sbjct 918 IRNYHMDYVEEQKTGEDWMSVIFLYKLKKGLTYNSYGMNVAKLARLDKDIINRAFSISEE 977 Query 60 LQQESNNQKRKLQHLDQTEEENKTNNNT-QDTLKKL 94 L++ES N+ L+ + K++N T D L KL Sbjct 978 LRKESINED-ALKLFSSLKRILKSDNITATDKLAKL 1012 > tpv:TP01_0185 DNA repair protein; K08737 DNA mismatch repair protein MSH6 Length=1160 Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 5/101 (4%) Query 1 VEGVHNYHVRAAVCKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLPP-----ALTSRAAA 55 + V +H+ A V ++ R V FLY + G +S+G+HVA A +P A+ +R Sbjct 1052 LSNVSMFHMAAKVDEETRSVEFLYKLVPGVCPDSHGMHVAKLARVPEHIIQNAMEARMRL 1111 Query 56 ISNQLQQESNNQKRKLQHLDQTEEENKTNNNTQDTLKKLRN 96 ++++ E + KL + E NN D LK++ N Sbjct 1112 YNSEVFGEGESASNKLLEILTEEILEAHYNNDNDKLKEIYN 1152 > eco:b2733 mutS, ant, ECK2728, fdv, JW2703, plm; methyl-directed mismatch repair protein; K03555 DNA mismatch repair protein MutS Length=853 Score = 42.4 bits (98), Expect = 3e-04, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Query 1 VEGVHNYHVRAAVCKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQL 60 +EGV N H+ A + ++F++ V++G A SYG+ VAA AG+P + RA +L Sbjct 739 MEGVANVHLDA--LEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLREL 796 Query 61 QQESNN 66 + S N Sbjct 797 ESISPN 802 > hsa:4437 MSH3, DUP, MGC163306, MGC163308, MRP1; mutS homolog 3 (E. coli); K08736 DNA mismatch repair protein MSH3 Length=1137 Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 4/70 (5%) Query 20 VSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQESNNQKRKLQHLDQTEE 79 V+FLY + G A SYG++VA A +P + +AA S +L+ N ++++L++ + Sbjct 1053 VTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTKRKRLKYFAKLW- 1111 Query 80 ENKTNNNTQD 89 T +N QD Sbjct 1112 ---TMHNAQD 1118 > ath:AT3G20475 MSH5; MSH5 (MUTS-HOMOLOGUE 5); ATP binding / damaged DNA binding / mismatched DNA binding; K08741 DNA mismatch repair protein MSH5 Length=807 Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query 19 QVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQESNNQKRKLQHLDQTE 78 ++ FLY + G SYG+H A AG+P + RAA + + ESNN KL LD+ Sbjct 718 EIVFLYRLIPGQTLLSYGLHCALLAGVPEEVVKRAAIVLDAF--ESNNNVDKLS-LDKIS 774 Query 79 EENKTNNNTQDTLKKL 94 +++ + D +L Sbjct 775 SQDQAFKDAVDKFAEL 790 > ath:AT4G02070 MSH6; MSH6 (MUTS HOMOLOG 6); damaged DNA binding; K08737 DNA mismatch repair protein MSH6 Length=1324 Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 0/55 (0%) Query 19 QVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQESNNQKRKLQH 73 +V+FLY + G SYGV+VA AGLP + RA S + + RK H Sbjct 1229 EVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALYGKNHRKTDH 1283 > ath:AT4G25540 MSH3; MSH3 (Arabidopsis homolog of DNA mismatch repair protein MSH3); damaged DNA binding / mismatched DNA binding / protein binding; K08736 DNA mismatch repair protein MSH3 Length=1081 Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Query 4 VHNYHVRAAVCKKKR------QVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAIS 57 V YHV +K + V++LY + G S+G VA A +PP+ RA +++ Sbjct 946 VGTYHVSYLTLQKDKGSYDHDDVTYLYKLVRGLCSRSFGFKVAQLAQIPPSCIRRAISMA 1005 Query 58 NQLQQESNNQKR 69 +L+ E ++R Sbjct 1006 AKLEAEVRARER 1017 > sce:YOL090W MSH2, PMS5; Msh2p; K08735 DNA mismatch repair protein MSH2 Length=964 Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 10/108 (9%) Query 4 VHNYHVRAAVCKKKRQ-------VSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAI 56 V N HV A + K ++ ++ LY V+ G +D S+G+HVA P + A Sbjct 816 VKNMHVVAHIEKNLKEQKHDDEDITLLYKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRK 875 Query 57 SNQLQQ-ESNNQKRKLQHLDQTEEENKTNNNTQDTLKK-LRNIISEAF 102 +N+L ++NN+ K L +E N+ N + LK+ +R + E Sbjct 876 ANELDDLKTNNEDLKKAKL-SLQEVNEGNIRLKALLKEWIRKVKEEGL 922 > pfa:PFE0270c DNA repair protein, putative; K08737 DNA mismatch repair protein MSH6 Length=1350 Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 0/52 (0%) Query 2 EGVHNYHVRAAVCKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRA 53 + + NYH+ ++ ++ ++ FLY +G S+G+H+A AGLP + A Sbjct 1251 KNISNYHMSLSIDDEQEKIIFLYKFIKGVCPKSFGIHIAKLAGLPKEIIDLA 1302 > dre:406845 msh2, wu:fc06b02, wu:fc13e09, zgc:55333; mutS homolog 2 (E. coli); K08735 DNA mismatch repair protein MSH2 Length=936 Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Query 1 VEGVHNYHVRAAVCKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLP 46 V V N HV A ++ LY VK+G D S+G+HVA A P Sbjct 794 VPTVRNLHVTALTTDS--TLTMLYKVKKGVCDQSFGIHVAELASFP 837 > hsa:4439 MSH5, DKFZp434C1615, G7, MGC2939, MUTSH5, NG23; mutS homolog 5 (E. coli); K08741 DNA mismatch repair protein MSH5 Length=834 Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 0/48 (0%) Query 14 CKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQ 61 C+ + F Y V EG A S+ H AA AGLP L +R +S+ ++ Sbjct 732 CEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIR 779 > mmu:17686 Msh3, D13Em1, Rep-3, Rep3; mutS homolog 3 (E. coli); K08736 DNA mismatch repair protein MSH3 Length=1095 Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 0/53 (0%) Query 20 VSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQESNNQKRKLQ 72 V+FLY + G A SYG++VA A +P + +AA S +L+ + ++++L+ Sbjct 1011 VTFLYQITRGIAARSYGLNVAKLADVPREVLQKAAHKSKELEGLVSLRRKRLE 1063 > mmu:100046843 DNA mismatch repair protein Msh3-like Length=961 Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 0/53 (0%) Query 20 VSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQESNNQKRKLQ 72 V+FLY + G A SYG++VA A +P + +AA S +L+ + ++++L+ Sbjct 877 VTFLYQITRGIAARSYGLNVAKLADVPREVLQKAAHKSKELEGLVSLRRKRLE 929 > bbo:BBOV_I003810 19.m02277; DNA mismatch repair enzyme; K08735 DNA mismatch repair protein MSH2 Length=791 Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Query 4 VHNYHVRAAVCKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQE 63 V N +V A ++ +++ LY++K+G SY ++VA A P + + A +L+ Sbjct 696 VENKYVAAKYFEETKKMVLLYEIKDGVCKESYAINVADIALFPQEVIANAQVKLAELEHV 755 Query 64 SNNQKRKLQH-LDQTEEENKTNNNTQDTLKKLR 95 + KL H L T NN + + KL+ Sbjct 756 DKDIDLKLLHQLTATSTYEDFRNNYPNLIAKLQ 788 > sce:YDR097C MSH6, PMS3; Msh6p; K08737 DNA mismatch repair protein MSH6 Length=1242 Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 0/53 (0%) Query 18 RQVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQESNNQKRK 70 R V+FLY + EG ++ S+G+HVA+ G+ + A ++ L+ S K + Sbjct 1124 RNVTFLYKMLEGQSEGSFGMHVASMCGISKEIIDNAQIAADNLEHTSRLVKER 1176 > cpv:cgd8_370 DNA repair protein ; K08737 DNA mismatch repair protein MSH6 Length=1242 Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 0/58 (0%) Query 7 YHVRAAVCKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQES 64 +H+ + + R ++FLY G SYG++VA AG+P + + A++ ++ + Sbjct 1141 FHMDLKLNNETRSITFLYKFISGICPKSYGMNVAQLAGIPQEVVDNSVALAKDVESST 1198 > dre:565400 novel protein similar to vertebrate mutS homolog 3 (E. coli) (MSH3); K08736 DNA mismatch repair protein MSH3 Length=1083 Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 0/49 (0%) Query 20 VSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQESNNQK 68 ++FLY + EG A SYG++VA A +P ++ AA S +L+ N+++ Sbjct 1007 ITFLYQLIEGAAARSYGLNVARLAEIPESILRTAAFKSKELEALVNSRR 1055 > sce:YDL154W MSH5; Msh5p; K08741 DNA mismatch repair protein MSH5 Length=901 Score = 36.2 bits (82), Expect = 0.025, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%) Query 20 VSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQESNNQKRKLQHLDQTEE 79 ++FL+ VKEG + S+G++ A GL + RA +S + + + + Q + TE+ Sbjct 805 ITFLFKVKEGISKQSFGIYCAKVCGLSRDIVERAEELSRMINRGDDVVQ---QCGNLTEK 861 Query 80 ENKTNNNTQDTLKKL 94 E + Q+ +KK Sbjct 862 EMREFQKNQEIVKKF 876 > tpv:TP01_0456 DNA mismatch repair protein MSH2; K08735 DNA mismatch repair protein MSH2 Length=790 Score = 35.8 bits (81), Expect = 0.039, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 0/69 (0%) Query 3 GVHNYHVRAAVCKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQ 62 GV N H+ A ++FLY VK+G S+G++VA A P + A +L++ Sbjct 698 GVVNKHLTAQFYDSINSMTFLYKVKDGVCKKSFGINVAIIAKFPQDVIESAQNKLKELER 757 Query 63 ESNNQKRKL 71 + + ++ L Sbjct 758 KYSPRRTDL 766 > mmu:17687 Msh5, G7, Mut5; mutS homolog 5 (E. coli); K08741 DNA mismatch repair protein MSH5 Length=833 Score = 35.8 bits (81), Expect = 0.039, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 0/48 (0%) Query 14 CKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQ 61 C+ + F Y + +G A S+ H AA AGLP L +R +S+ ++ Sbjct 731 CEDGEDLVFFYQLCQGVASASHASHTAAQAGLPDPLIARGKEVSDLIR 778 > dre:570030 msh5; mutS homolog 5 (E. coli); K08741 DNA mismatch repair protein MSH5 Length=793 Score = 35.0 bits (79), Expect = 0.056, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query 19 QVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQESNNQKRKLQHLDQTE 78 ++ FLY VK G +S ++A AG+P L R +S+ + + RK++ E Sbjct 696 ELVFLYQVKNGICQSSCAANIATLAGIPDDLVRRGVEVSDLYR--TGRTIRKMERPSADE 753 Query 79 EENK 82 + N+ Sbjct 754 QNNR 757 > hsa:4436 MSH2, COCA1, FCC1, HNPCC, HNPCC1, LCFS2; mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli); K08735 DNA mismatch repair protein MSH2 Length=934 Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Query 1 VEGVHNYHVRAAVCKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLP 46 + V+N HV A + ++ LY VK+G D S+G+HVA A P Sbjct 794 IPTVNNLHVTAL--TTEETLTMLYQVKKGVCDQSFGIHVAELANFP 837 > mmu:17685 Msh2, AI788990; mutS homolog 2 (E. coli); K08735 DNA mismatch repair protein MSH2 Length=935 Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Query 4 VHNYHVRAAVCKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLP 46 V+N HV A + ++ LY VK+G D S+G+HVA A P Sbjct 797 VNNLHVTAL--TTEETLTMLYQVKKGVCDQSFGIHVAELANFP 837 > cpv:cgd8_3950 MutS like ABC ATpase involved in DNA repair ; K08735 DNA mismatch repair protein MSH2 Length=848 Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 9/59 (15%) Query 20 VSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQ---------QESNNQKR 69 + FLY V++G D S GV VA +GLP R+ + +L Q N+KR Sbjct 738 LKFLYKVEKGFTDKSLGVDVAELSGLPSETVKRSREKAEELTLVEQVYVDPQSCQNKKR 796 > ath:AT3G24495 MSH7; MSH7 (MUTS HOMOLOG 7); ATP binding / damaged DNA binding / mismatched DNA binding Length=1109 Score = 33.1 bits (74), Expect = 0.25, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%) Query 22 FLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQESNNQKRKLQHLDQTEEEN 81 FLY + EG SYG+ VA AG+P + A+ + +++ ++ +E + Sbjct 1007 FLYRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMKRSIG------ENFKSSELRS 1060 Query 82 KTNNNTQDTLKKLRNI 97 + ++ +D LK L I Sbjct 1061 EFSSLHEDWLKSLVGI 1076 > cpv:cgd8_3640 niemann-Pick type C1 disease protein/ patched like cholesterol transporter of the SecD family, 12 transmembrane domain Length=1465 Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Query 39 VAAFAGL--PPALTSRAAAISNQLQQESNNQKRKLQHLDQTEEENKTNN 85 V+A AG+ PA+ S A N ++ NN+KR+ Q LD T E K+NN Sbjct 1416 VSATAGIMIAPAILSIALDFGNFIRDYYNNRKRQ-QELDDTILEIKSNN 1463 > cel:H26D21.2 msh-2; MSH (MutS Homolog) family member (msh-2); K08735 DNA mismatch repair protein MSH2 Length=849 Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query 16 KKRQVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQ----ESNNQKRKL 71 + ++ LY V EG A S+G+ VA G+ + ++AA + L++ +S +K L Sbjct 776 ENNEIHMLYKVFEGVAQCSFGLQVAKMVGIDENVINKAAQLLEGLEKKLVIDSKKKKELL 835 Query 72 QHLD 75 + D Sbjct 836 ESAD 839 > hsa:65267 WNK3, FLJ30437, FLJ42662, KIAA1566, PRKWNK3; WNK lysine deficient protein kinase 3 (EC:2.7.11.1); K08867 WNK lysine deficient protein kinase [EC:2.7.11.1] Length=1743 Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 0/45 (0%) Query 55 AISNQLQQESNNQKRKLQHLDQTEEENKTNNNTQDTLKKLRNIIS 99 A+ N L + S NQ ++ QH +TE NK + NT T+ IS Sbjct 1604 AVGNSLIKPSLNQLKQSQHKLETENWNKVSENTPSTMGYTSTWIS 1648 > dre:559917 mutS homolog 4-like; K08740 DNA mismatch repair protein MSH4 Length=931 Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust. Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query 8 HVRAAVCKKKRQVSFLYDVKEGHADN-SYGVHVAAFAGLPPALTSRAAAISNQLQQE 63 H+R + +R V + Y + GH++ +YG+ A LP + A +++++ Q+ Sbjct 808 HIRTGDGRAER-VVYTYQLSRGHSEERNYGIRAAEMTNLPLDIIQEAKTVADKINQK 863 > pfa:PFC0225c elongation factor (EF-TS), putative; K02357 elongation factor Ts Length=390 Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query 13 VCKKKRQVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQESNNQKRKLQ 72 V + K V F+Y + DN V AG N L +NN ++ Sbjct 135 VARNKMFVQFVYSLLNVTLDNDLSVGNCKNAGDNKNSEDGYTTSGNILS--NNNIMDEIL 192 Query 73 HLDQTEEENKTNNNTQDTLKKLRNIISE 100 L +EENK+N+ ++ L LRNI E Sbjct 193 SLPYVDEENKSNSTMREQLNYLRNIFRE 220 > tgo:TGME49_068390 hypothetical protein Length=359 Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 8/67 (11%) Query 48 ALTSRAAAI-------SNQLQQESNNQKRKLQHLDQTEEENKTNNNTQDTLKKLRNIISE 100 +L+SRAAA NQ + ES R + D+TE E++ NN +T K+ R + Sbjct 91 SLSSRAAAGRTALHLNENQTRGESGT-PRACESQDETEAESQANNEETETEKRDRQVEQA 149 Query 101 AFAAQTP 107 A A+ P Sbjct 150 AAASHLP 156 > dre:100148193 dnah6; dynein, axonemal, heavy chain 6 Length=4163 Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query 15 KKKRQVSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQLQQESNNQKRKLQHL 74 K+ VS +Y + E ++ + +A +A LPP +T+ I + + + + QHL Sbjct 758 KETVTVSEMYKLIECYSVPTPPEDIAVYATLPPCITAVRNTIDKAVGERDSYVDKFCQHL 817 Query 75 DQTEEENKTNNNTQDTLKKLRN 96 Q + + NN Q+ + N Sbjct 818 QQ--DIGQLNNTVQEVKAEAEN 837 > cel:Y47G6A.11 msh-6; MSH (MutS Homolog) family member (msh-6); K08737 DNA mismatch repair protein MSH6 Length=1186 Score = 28.9 bits (63), Expect = 4.8, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Query 8 HVRAAVCKKKRQ------VSFLYDVKEGHADNSYGVHVAAFAGLPPALTSRAAAISNQL 60 H++ V K+ + V+FLY+++ G SYG + A AG+ + A SN+ Sbjct 1094 HMKCVVDKENNEDPTMEDVTFLYELESGICPKSYGFYAAKLAGIDHQVVRNAYLESNKF 1152 > dre:559325 lysosomal trafficking regulator-like Length=2563 Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 0/49 (0%) Query 39 VAAFAGLPPALTSRAAAISNQLQQESNNQKRKLQHLDQTEEENKTNNNT 87 +A GL A R+ + ++ +ES +Q ++L +EE KT+N T Sbjct 1503 IARVKGLVKAPLKRSRSTADGADEESQDQLQELLESGAMDEEQKTDNTT 1551 > hsa:4438 MSH4; mutS homolog 4 (E. coli); K08740 DNA mismatch repair protein MSH4 Length=936 Score = 28.1 bits (61), Expect = 6.6, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query 15 KKKRQVSFLYDVKEG-HADNSYGVHVAAFAGLPPALTSRAAAISNQLQQESNNQKRKLQH 73 + K + + Y + +G + +YG+ A + LPP++ A I+ Q+ ++ +R Sbjct 822 RNKEAILYTYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQITRQILQNQRSTPE 881 Query 74 LDQ 76 +++ Sbjct 882 MER 884 > mmu:71909 Haus5, 2310022K01Rik; HAUS augmin-like complex, subunit 5 Length=619 Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Query 76 QTEEENKTNNNTQDTLKKLRNIISEAFAAQTPQL 109 Q +E + N N TLKKL N++ +A Q P+L Sbjct 555 QVSQEKEQNENVGQTLKKLSNLLKQAL-EQIPEL 587 > sce:YHR114W BZZ1, LSB7; Bzz1p Length=633 Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%) Query 58 NQLQQESNNQKRKLQHLDQTEEENKTNNNT------QDTLKKLRNIISEAFAAQTPQL 109 N LQ ++ N+ KL L++ + E KTN + DTLK+ N++S + +T +L Sbjct 326 NSLQDKTQNELSKLSTLNKIKHEMKTNEDNINATKFYDTLKEYLNVVSPFTSHETLKL 383 > dre:571240 transmembrane channel-like gene family 2-like Length=761 Score = 27.7 bits (60), Expect = 8.9, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 2/39 (5%) Query 62 QESNNQKRKLQHLDQTEEENKTNN--NTQDTLKKLRNII 98 + SNN+ +K + + EE+N+ NN +T +K L +++ Sbjct 639 KNSNNELKKKMQMARDEEKNRRNNKDSTNQVMKDLEDLL 677 > xla:380199 syap1, MGC53226; synapse associated protein 1, SAP47 homolog (Drosophila) Length=364 Score = 27.7 bits (60), Expect = 9.2, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 0/44 (0%) Query 57 SNQLQQESNNQKRKLQHLDQTEEENKTNNNTQDTLKKLRNIISE 100 ++ L QE ++ + LD+ EE +K T+D +K+L++++ E Sbjct 295 ASNLNQEDFRKEMEQLILDKKEEVDKAEEETEDWIKELQDVVQE 338 > pfa:PF10_0224 dynein heavy chain, putative; K06025 [EC:3.6.4.2] Length=5687 Score = 27.7 bits (60), Expect = 9.7, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 0/49 (0%) Query 52 RAAAISNQLQQESNNQKRKLQHLDQTEEENKTNNNTQDTLKKLRNIISE 100 + + ++LQ+ +NN+ + + LDQ E + K ++ + L++ N ++E Sbjct 4283 KVKPLMDKLQEATNNKNKAQEKLDQLENKVKELTDSVEKLRRKMNEVNE 4331 Lambda K H 0.312 0.125 0.345 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2067351240 Database: egene_temp_file_orthology_annotation_similarity_blast_database_966 Posted date: Sep 16, 2011 8:45 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40