bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_966 164,496 sequences; 82,071,388 total letters Query= Eace_0336_orf2 Length=153 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_024860 exosome complex exonuclease, putative ; K036... 125 4e-29 bbo:BBOV_III010600 17.m07916; hypothetical protein; K03679 exo... 101 1e-21 tpv:TP02_0081 hypothetical protein; K03679 exosome complex com... 97.8 1e-20 pfa:PFD0515w exosome complex exonuclease rrp4, putative; K0367... 96.3 3e-20 cpv:cgd8_2980 hypothetical protein ; K03679 exosome complex co... 94.0 2e-19 hsa:23404 EXOSC2, RRP4, Rrp4p, hRrp4p, p7; exosome component 2... 92.0 6e-19 mmu:227715 Exosc2, MGC30456, Rrp4; exosome component 2; K03679... 92.0 7e-19 xla:444032 exosc2, MGC82596; exosome component 2; K03679 exoso... 91.7 8e-19 dre:550234 exosc2, fa97b01, wu:fa97b01, zgc:110117; exosome co... 91.7 9e-19 cel:Y73B6BL.3 exos-2; EXOSome (multiexonuclease complex) compo... 90.5 2e-18 ath:AT1G03360 ATRRP4; ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL R... 85.1 8e-17 sce:YHR069C RRP4; Exosome non-catalytic core component; involv... 80.5 2e-15 > tgo:TGME49_024860 exosome complex exonuclease, putative ; K03679 exosome complex component RRP4 Length=353 Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 60/127 (47%), Positives = 88/127 (69%), Gaps = 2/127 (1%) Query 1 LSVAAVCLDVQRRRDDADVLIMRSMFQSADLLCCEVQKAQNDGTILLHTRSARYGRLQNG 60 L++AA+ L RRR D D+L M++ F D++CCEVQ+ + DG ILLHTRS RYGRL NG Sbjct 165 LALAAISLPEHRRRLDEDMLEMQNFFVVGDVICCEVQRVRADGQILLHTRSTRYGRLMNG 224 Query 61 IGLRVSPQLIKRQSKHIGHLQCGLQLILGVNGFLWISVPGGAAGGSGDGVSTPSQQQQHE 120 + L V+PQ I+RQS HI L CG+Q++LG+NG++WIS+P + + D ++ Q HE Sbjct 225 VFLAVAPQQIQRQSHHIVQLSCGVQVVLGLNGYIWISLPMKTS--AKDTMNYAHVQTTHE 282 Query 121 EQQQQQQ 127 + ++ + Sbjct 283 KVSKEMR 289 > bbo:BBOV_III010600 17.m07916; hypothetical protein; K03679 exosome complex component RRP4 Length=262 Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 50/109 (45%), Positives = 71/109 (65%), Gaps = 6/109 (5%) Query 12 RRRDDADVLIMRSMFQSADLLCCEVQKAQNDGTILLHTRSARYGRLQNGIGLRVSPQLIK 71 RR+ D DV MR++F ++ CEVQ+ +GT+LL TR+++YGRL NGI ++V P L+ Sbjct 102 RRKLDEDVYEMRNLFGIGHVISCEVQRVSPNGTVLLQTRTSKYGRLNNGILVKVKPNLML 161 Query 72 RQSKHIGHLQCGLQLILGVNGFLWISVPGGAAGGSGDGVSTPSQQQQHE 120 RQSKH+ L CG+ +ILG NGF+W+ G SGD +T Q H+ Sbjct 162 RQSKHMQELSCGISMILGCNGFIWL----GPIQKSGD--ATIHAQVYHD 204 > tpv:TP02_0081 hypothetical protein; K03679 exosome complex component RRP4 Length=263 Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 64/87 (73%), Gaps = 0/87 (0%) Query 11 QRRRDDADVLIMRSMFQSADLLCCEVQKAQNDGTILLHTRSARYGRLQNGIGLRVSPQLI 70 RR+ D D+ M ++F D++ CE+Q+ GTI+L TR+++YG+L+NGI +++ P L+ Sbjct 101 NRRKIDEDIYEMSNLFNVNDIVSCEIQRISPTGTIMLQTRTSKYGKLENGILVKIKPNLV 160 Query 71 KRQSKHIGHLQCGLQLILGVNGFLWIS 97 R+ KHI ++CG+++ILG NG++W++ Sbjct 161 IRKGKHIYDMECGVRIILGCNGYIWLT 187 > pfa:PFD0515w exosome complex exonuclease rrp4, putative; K03679 exosome complex component RRP4 Length=338 Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 5/122 (4%) Query 11 QRRRDDADVLIMRSMFQSADLLCCEVQKAQNDGTILLHTRSARYGRLQNGIGLRVSPQLI 70 QR R DV+ M +++ D++ CE+Q+ DGTI+LHTRS+ YG+L NG+ + V LI Sbjct 148 QRIRLYNDVINMIHIYKPDDIIACEIQRISTDGTIILHTRSSIYGKLSNGVLIIVPQTLI 207 Query 71 KRQSKHIGHLQCGLQLILGVNGFLWISVPGGAAGGSGDGVSTPSQQQQHEEQQQQQQQQQ 130 Q KHI C +Q+ILG+NG++WIS P + + P+ Q+ E+ + + Sbjct 208 HNQKKHIFVFPCNVQIILGMNGYIWISSPIKKSKDTN-----PNSVDQNIEENKFEDVDH 262 Query 131 QS 132 + Sbjct 263 TT 264 > cpv:cgd8_2980 hypothetical protein ; K03679 exosome complex component RRP4 Length=144 Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 40/78 (51%), Positives = 62/78 (79%), Gaps = 0/78 (0%) Query 22 MRSMFQSADLLCCEVQKAQNDGTILLHTRSARYGRLQNGIGLRVSPQLIKRQSKHIGHLQ 81 M+S+ D++C EVQ+ Q++G LHTRSA+YG+L NG+ ++V +LI+RQ++HI L+ Sbjct 1 MKSILDEGDVICTEVQRVQSEGICHLHTRSAKYGKLANGMVVKVPNKLIQRQAQHIVKLK 60 Query 82 CGLQLILGVNGFLWISVP 99 G+QLILG+NG++WIS+P Sbjct 61 YGIQLILGLNGYVWISLP 78 > hsa:23404 EXOSC2, RRP4, Rrp4p, hRrp4p, p7; exosome component 2; K03679 exosome complex component RRP4 Length=293 Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 43/85 (50%), Positives = 54/85 (63%), Gaps = 0/85 (0%) Query 12 RRRDDADVLIMRSMFQSADLLCCEVQKAQNDGTILLHTRSARYGRLQNGIGLRVSPQLIK 71 RRR D L MR Q DL+ EVQ +DG + LHTRS +YG+L G+ ++VSP L+K Sbjct 121 RRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVK 180 Query 72 RQSKHIGHLQCGLQLILGVNGFLWI 96 RQ H L CG +ILG NGF+WI Sbjct 181 RQKTHFHDLPCGASVILGNNGFIWI 205 > mmu:227715 Exosc2, MGC30456, Rrp4; exosome component 2; K03679 exosome complex component RRP4 Length=293 Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 43/85 (50%), Positives = 54/85 (63%), Gaps = 0/85 (0%) Query 12 RRRDDADVLIMRSMFQSADLLCCEVQKAQNDGTILLHTRSARYGRLQNGIGLRVSPQLIK 71 RRR D L MR Q DL+ EVQ +DG + LHTRS +YG+L G+ ++VSP L+K Sbjct 121 RRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVK 180 Query 72 RQSKHIGHLQCGLQLILGVNGFLWI 96 RQ H L CG +ILG NGF+WI Sbjct 181 RQKTHFHDLPCGASVILGNNGFIWI 205 > xla:444032 exosc2, MGC82596; exosome component 2; K03679 exosome complex component RRP4 Length=293 Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 43/85 (50%), Positives = 56/85 (65%), Gaps = 0/85 (0%) Query 12 RRRDDADVLIMRSMFQSADLLCCEVQKAQNDGTILLHTRSARYGRLQNGIGLRVSPQLIK 71 RRR D L MRS Q DL+ EVQ +DG + LHTRS +YG+L G+ ++VSP LIK Sbjct 121 RRRSAEDELAMRSYLQEGDLISAEVQAVYSDGALSLHTRSLKYGKLGQGLLVQVSPSLIK 180 Query 72 RQSKHIGHLQCGLQLILGVNGFLWI 96 R+ H +L CG +ILG NGF+W+ Sbjct 181 RRKTHFHNLTCGASVILGNNGFIWL 205 > dre:550234 exosc2, fa97b01, wu:fa97b01, zgc:110117; exosome component 2; K03679 exosome complex component RRP4 Length=254 Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 55/86 (63%), Gaps = 0/86 (0%) Query 12 RRRDDADVLIMRSMFQSADLLCCEVQKAQNDGTILLHTRSARYGRLQNGIGLRVSPQLIK 71 RRR D L MR Q DL+ EVQ +DG + LHTRS +YG+L G+ + VSP L+K Sbjct 82 RRRSTQDELAMRDYLQEGDLISAEVQSIFSDGALSLHTRSLKYGKLGQGVLVYVSPSLVK 141 Query 72 RQSKHIGHLQCGLQLILGVNGFLWIS 97 RQ H +L CG LILG NG++W+S Sbjct 142 RQKTHFHNLPCGASLILGNNGYVWLS 167 > cel:Y73B6BL.3 exos-2; EXOSome (multiexonuclease complex) component family member (exos-2); K03679 exosome complex component RRP4 Length=303 Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 2/101 (1%) Query 12 RRRDDADVLIMRSMFQSADLLCCEVQKAQNDGTILLHTRSARYGRLQNGIGLRVSPQLIK 71 RR+D D M ++ +L+C EVQ+ Q+DGT++LHTR+ +YG+LQ GI ++V P LIK Sbjct 127 RRKDVEDEEKMSEFLKNGELICAEVQQVQHDGTLMLHTRNNKYGKLQQGILIKVPPHLIK 186 Query 72 RQSKHIGHLQCGLQLILGVNGFLWI--SVPGGAAGGSGDGV 110 + KH L G+ +I+G NG +W+ S+P G V Sbjct 187 KSKKHFHTLPYGMAVIIGCNGSVWVTPSLPETTLEEDGSHV 227 > ath:AT1G03360 ATRRP4; ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4); RNA binding / exonuclease; K03679 exosome complex component RRP4 Length=322 Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 59/88 (67%), Gaps = 1/88 (1%) Query 10 VQRRRDDADVLIMRSMFQSADLLCCEVQKAQNDGTILLHTRSARYGRLQNGIGLRVSPQL 69 +QRRR D L MR++F D++C EV+ Q+DG++ L RS +YG+L+ G L+V P L Sbjct 132 IQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKGQLLKVDPYL 191 Query 70 IKRQSKHIGHLQC-GLQLILGVNGFLWI 96 +KR H +++ G+ LI+G NGF+W+ Sbjct 192 VKRSKHHFHYVESLGIDLIIGCNGFIWV 219 > sce:YHR069C RRP4; Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; predicted to contain RNA binding domains; has similarity to human hRrp4p (EXOSC2) (EC:3.1.13.-); K03679 exosome complex component RRP4 Length=359 Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 0/87 (0%) Query 10 VQRRRDDADVLIMRSMFQSADLLCCEVQKAQNDGTILLHTRSARYGRLQNGIGLRVSPQL 69 + RR+ ++D L MRS + DLL EVQ DG+ LHTRS +YG+L+NG+ +V L Sbjct 147 ILRRKSESDELQMRSFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSL 206 Query 70 IKRQSKHIGHLQCGLQLILGVNGFLWI 96 I R H +L + ++LGVNG++W+ Sbjct 207 IVRAKNHTHNLPGNITVVLGVNGYIWL 233 Lambda K H 0.322 0.135 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 3256415000 Database: egene_temp_file_orthology_annotation_similarity_blast_database_966 Posted date: Sep 16, 2011 8:45 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40