bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
164,496 sequences; 82,071,388 total letters
Query= Eace_0280_orf3
Length=198
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_024580 splicing factor, putative (EC:3.1.2.15); K12... 349 4e-96
bbo:BBOV_III006220 17.m07552; RNA recognition motif domaining ... 303 3e-82
xla:379792 sf3b4, MGC52742, spx; splicing factor 3b, subunit 4... 280 2e-75
xla:446629 MGC82420 protein; K12831 splicing factor 3B subunit 4 280 2e-75
hsa:10262 SF3B4, Hsh49, MGC10828, SAP49, SF3b49; splicing fact... 280 2e-75
mmu:107701 Sf3b4, 49kDa, MGC36369, MGC36564, SF3b49, SF3b50, S... 280 3e-75
dre:192318 sf3b4, chunp6902, fb36a04, wu:fb36a04; splicing fac... 280 3e-75
ath:AT2G18510 emb2444 (embryo defective 2444); RNA binding / n... 274 2e-73
mmu:666113 Gm7935, EG666113; predicted pseudogene 7935 274 2e-73
tpv:TP02_0374 spliceosome associated protein; K12831 splicing ... 273 2e-73
cel:C08B11.6 actin; Spliceosome-Associated Protein family memb... 264 1e-70
xla:734673 hypothetical protein MGC116464 263 2e-70
pfa:PF14_0194 spliceosome-associated protein, putative; K12831... 248 1e-65
cpv:cgd6_4490 U2 snRNP. Hsh49p, RRM domain containing protein ... 225 7e-59
hsa:8761 PABPC4, APP-1, APP1, FLJ43938, PABP4, iPABP; poly(A) ... 127 2e-29
mmu:230721 Pabpc4, MGC11665, MGC6685; poly(A) binding protein,... 127 3e-29
mmu:100503296 polyadenylate-binding protein 4-like 126 4e-29
cpv:cgd6_3010 poly(a)-binding protein fabm ; K13126 polyadenyl... 125 1e-28
dre:321035 pabpc4, cb12, sb:cb12; poly(A) binding protein, cyt... 124 2e-28
xla:444284 pabpc4, MGC80927, PABP, ePAB, ePABP; poly(A) bindin... 124 2e-28
dre:327625 pabpc1l, fi20g03, pab-2, wu:fi20g03, zgc:55855; pol... 124 2e-28
mmu:18458 Pabpc1, PABP, Pabp1, PabpI, Pabpl1, ePAB; poly(A) bi... 123 4e-28
hsa:26986 PABPC1, PAB1, PABP, PABP1, PABPC2, PABPL1; poly(A) b... 123 5e-28
dre:606498 pabpc1a, pabpc1, wu:fb16a02, wu:fi19b08, wu:fj12d09... 122 7e-28
xla:432140 pabpc1-b, MGC130736, MGC79060, pab1, pabp, pabp1, p... 122 8e-28
dre:393856 pabpc1b, MGC77608, pabpc1, zgc:77608; poly A bindin... 122 8e-28
sce:YOR319W HSH49; Hsh49p; K12831 splicing factor 3B subunit 4 121 1e-27
xla:379896 pabpc1-a, MGC53109, pab1, pabp, pabp1, pabpc1, pabp... 121 2e-27
hsa:80336 PABPC1L, C20orf119, FLJ11840, FLJ30809, FLJ42053, PA... 120 4e-27
dre:100333577 splicing factor 3b, subunit 4, 49kD-like 119 6e-27
mmu:67543 Pabpc6, 4932702K14Rik, AI428050, MGC132900, Pabpc3; ... 119 7e-27
ath:AT4G34110 PAB2; PAB2 (POLY(A) BINDING 2); RNA binding / tr... 119 8e-27
hsa:5042 PABPC3, PABP3, PABPL3, tPABP; poly(A) binding protein... 117 2e-26
xla:443777 pabpc1l-b, MGC81363, epab, epabp-b, pabpc1l1; poly(... 117 3e-26
mmu:18459 Pabpc2, PABP, PABP+, Pabp2; poly(A) binding protein,... 117 4e-26
xla:398221 pabpc1l-a, MGC82273, ePAB, epabp-a, pabpc1l1; poly(... 116 5e-26
mmu:93728 Pabpc5, C820015E17, MGC130340, MGC130341; poly(A) bi... 115 1e-25
hsa:140886 PABPC5, FLJ51677, PABP5; poly(A) binding protein, c... 115 1e-25
hsa:132430 PABPC4L, DKFZp686J06116; poly(A) binding protein, c... 115 1e-25
ath:AT1G49760 PAB8; PAB8 (POLY(A) BINDING PROTEIN 8); RNA bind... 114 2e-25
mmu:381404 Pabpc1l, 1810053B01Rik, Epab; poly(A) binding prote... 114 3e-25
mmu:668382 Pabpc1l2b-ps, EG668382, Pabpc1l2b, Rbm32b; poly(A) ... 113 5e-25
cel:F18H3.3 pab-2; PolyA Binding protein family member (pab-2)... 113 5e-25
pfa:PFL1170w polyadenylate-binding protein, putative; K13126 p... 112 9e-25
hsa:340529 PABPC1L2A, MGC168104, PABPC1L2B, RBM32A; poly(A) bi... 111 2e-24
hsa:645974 PABPC1L2B, MGC168104, PABPC1L2A, RBM32B; poly(A) bi... 111 2e-24
bbo:BBOV_IV008280 23.m06515; polyadenylate binding protein; K1... 110 3e-24
sce:YER165W PAB1; Pab1p; K13126 polyadenylate-binding protein 110 4e-24
tgo:TGME49_024850 polyadenylate-binding protein, putative ; K1... 109 6e-24
tpv:TP01_0945 polyadenylate binding protein; K13126 polyadenyl... 109 7e-24
> tgo:TGME49_024580 splicing factor, putative (EC:3.1.2.15); K12831
splicing factor 3B subunit 4
Length=576
Score = 349 bits (895), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 153/198 (77%), Positives = 182/198 (91%), Gaps = 0/198 (0%)
Query 1 ADIAQVFERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVE 60
ADI QV+ERNQ+ATLY+GN+D+QVD+DLLWELF Q G VR V++P+DK+TG HQGY FVE
Sbjct 17 ADITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVE 76
Query 61 FESETDADFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLFDTF 120
F +E DAD+ALKLM MVKLYGK LRL+K+A DRR FDVGAN+F+GNLDPD+DEK ++DTF
Sbjct 77 FRNEVDADYALKLMNMVKLYGKALRLNKSAQDRRNFDVGANVFLGNLDPDVDEKTIYDTF 136
Query 121 SSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKD 180
S+FGN++SAK+MRDPETG+S+GF FVS ++FEASDAALAAMNGQF+CNRP+HVSYAYKKD
Sbjct 137 SAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKD 196
Query 181 TRGERHGSAAERLLAANR 198
TRGERHGSAAERLLAANR
Sbjct 197 TRGERHGSAAERLLAANR 214
> bbo:BBOV_III006220 17.m07552; RNA recognition motif domaining
containing protein; K12831 splicing factor 3B subunit 4
Length=280
Score = 303 bits (775), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 136/197 (69%), Positives = 172/197 (87%), Gaps = 0/197 (0%)
Query 2 DIAQVFERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEF 61
D +++RNQEATLYVGN+D QVDE+LLWE F Q G V+ ++IP+DKVTG HQGYAFVEF
Sbjct 7 DPLSLYDRNQEATLYVGNVDTQVDEELLWEFFVQVGPVKHLHIPRDKVTGHHQGYAFVEF 66
Query 62 ESETDADFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFS 121
+++ DAD+A++++ VKLY KPLRL+KA+ D++TF++GANLF+GNLDPD+D+K L DTF+
Sbjct 67 DTDDDADYAIRILNFVKLYNKPLRLNKASRDKQTFEIGANLFIGNLDPDVDDKQLHDTFA 126
Query 122 SFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDT 181
SFGNV+SA V+RD + K FAFVS +SFEASDAALAAMNGQF+CN+P+HVSYAYKKDT
Sbjct 127 SFGNVISANVVRDGDATDRKAFAFVSYDSFEASDAALAAMNGQFICNKPIHVSYAYKKDT 186
Query 182 RGERHGSAAERLLAANR 198
+GERHGSAAERL+AANR
Sbjct 187 KGERHGSAAERLIAANR 203
> xla:379792 sf3b4, MGC52742, spx; splicing factor 3b, subunit
4, 49kDa
Length=377
Score = 280 bits (717), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 125/192 (65%), Positives = 164/192 (85%), Gaps = 1/192 (0%)
Query 6 VFERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESET 65
+ ERNQ+AT+YVG +D +V E LLWELF QAG V ++PKD+VTG HQGY FVEF SE
Sbjct 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query 66 DADFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFSSFGN 125
DAD+A+K+M M+KLYGKP+R++KA+ + DVGAN+F+GNLDP++DEK+L+DTFS+FG
Sbjct 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query 126 VV-SAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGE 184
++ + K+MRDP+TG SKG+AF++ SF+ASDAA+ AMNGQ+LCNRP+ VSYA+KKD++GE
Sbjct 126 ILQTPKIMRDPDTGNSKGYAFINYASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query 185 RHGSAAERLLAA 196
RHGSAAERLLAA
Sbjct 186 RHGSAAERLLAA 197
> xla:446629 MGC82420 protein; K12831 splicing factor 3B subunit
4
Length=383
Score = 280 bits (717), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 125/192 (65%), Positives = 164/192 (85%), Gaps = 1/192 (0%)
Query 6 VFERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESET 65
+ ERNQ+AT+YVG +D +V E LLWELF QAG V ++PKD+VTG HQGY FVEF SE
Sbjct 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query 66 DADFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFSSFGN 125
DAD+A+K+M M+KLYGKP+R++KA+ + DVGAN+F+GNLDP++DEK+L+DTFS+FG
Sbjct 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query 126 VV-SAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGE 184
++ + K+MRDP+TG SKG+AF++ SF+ASDAA+ AMNGQ+LCNRP+ VSYA+KKD++GE
Sbjct 126 ILQTPKIMRDPDTGNSKGYAFINYASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query 185 RHGSAAERLLAA 196
RHGSAAERLLAA
Sbjct 186 RHGSAAERLLAA 197
> hsa:10262 SF3B4, Hsh49, MGC10828, SAP49, SF3b49; splicing factor
3b, subunit 4, 49kDa; K12831 splicing factor 3B subunit
4
Length=424
Score = 280 bits (716), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 125/192 (65%), Positives = 164/192 (85%), Gaps = 1/192 (0%)
Query 6 VFERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESET 65
+ ERNQ+AT+YVG +D +V E LLWELF QAG V ++PKD+VTG HQGY FVEF SE
Sbjct 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query 66 DADFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFSSFGN 125
DAD+A+K+M M+KLYGKP+R++KA+ + DVGAN+F+GNLDP++DEK+L+DTFS+FG
Sbjct 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query 126 VV-SAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGE 184
++ + K+MRDP+TG SKG+AF++ SF+ASDAA+ AMNGQ+LCNRP+ VSYA+KKD++GE
Sbjct 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query 185 RHGSAAERLLAA 196
RHGSAAERLLAA
Sbjct 186 RHGSAAERLLAA 197
> mmu:107701 Sf3b4, 49kDa, MGC36369, MGC36564, SF3b49, SF3b50,
Sap49; splicing factor 3b, subunit 4; K12831 splicing factor
3B subunit 4
Length=424
Score = 280 bits (715), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 125/192 (65%), Positives = 164/192 (85%), Gaps = 1/192 (0%)
Query 6 VFERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESET 65
+ ERNQ+AT+YVG +D +V E LLWELF QAG V ++PKD+VTG HQGY FVEF SE
Sbjct 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query 66 DADFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFSSFGN 125
DAD+A+K+M M+KLYGKP+R++KA+ + DVGAN+F+GNLDP++DEK+L+DTFS+FG
Sbjct 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query 126 VV-SAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGE 184
++ + K+MRDP+TG SKG+AF++ SF+ASDAA+ AMNGQ+LCNRP+ VSYA+KKD++GE
Sbjct 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query 185 RHGSAAERLLAA 196
RHGSAAERLLAA
Sbjct 186 RHGSAAERLLAA 197
> dre:192318 sf3b4, chunp6902, fb36a04, wu:fb36a04; splicing factor
3b, subunit 4; K12831 splicing factor 3B subunit 4
Length=400
Score = 280 bits (715), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 125/192 (65%), Positives = 164/192 (85%), Gaps = 1/192 (0%)
Query 6 VFERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESET 65
+ ERNQ+AT+YVG +D +V E LLWELF QAG V ++PKD+VTG HQGY FVEF SE
Sbjct 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query 66 DADFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFSSFGN 125
DAD+A+K+M M+KLYGKP+R++KA+ + DVGAN+F+GNLDP++DEK+L+DTFS+FG
Sbjct 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGV 125
Query 126 VV-SAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGE 184
++ + K+MRDP+TG SKG+AF++ SF+ASDAA+ AMNGQ+LCNRP+ VSYA+KKD++GE
Sbjct 126 ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query 185 RHGSAAERLLAA 196
RHGSAAERLLAA
Sbjct 186 RHGSAAERLLAA 197
> ath:AT2G18510 emb2444 (embryo defective 2444); RNA binding /
nucleic acid binding / nucleotide binding; K12831 splicing
factor 3B subunit 4
Length=363
Score = 274 bits (700), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 122/190 (64%), Positives = 161/190 (84%), Gaps = 1/190 (0%)
Query 8 ERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDA 67
ERNQ+AT+YVG +DAQ+ E+LLWELF QAG V V +PKD+VT HQ Y F+E+ SE DA
Sbjct 20 ERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDA 79
Query 68 DFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVV 127
D+A+K++ M+KL+GKP+R++KA+ D+++ DVGANLF+GNLDPD+DEK+L+DTFS+FG +
Sbjct 80 DYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIA 139
Query 128 S-AKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGERH 186
S K+MRDP+TG S+GF F+S +SFEASDAA+ +M GQ+L NR + VSYAYKKDT+GERH
Sbjct 140 SNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERH 199
Query 187 GSAAERLLAA 196
G+ AERLLAA
Sbjct 200 GTPAERLLAA 209
> mmu:666113 Gm7935, EG666113; predicted pseudogene 7935
Length=425
Score = 274 bits (700), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 122/192 (63%), Positives = 162/192 (84%), Gaps = 1/192 (0%)
Query 6 VFERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESET 65
+ ERNQ+AT+YVG +D +V E LLWELF QAG V ++PKD+VTG HQGY FVEF SE
Sbjct 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query 66 DADFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFSSFGN 125
DAD+A+K+M M+KLYGKP+R++KA+ + DVGAN+F+GNLDP++DEK+L+DTF +FG
Sbjct 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFRAFGV 125
Query 126 VV-SAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGE 184
++ + K+M DP+TG SKG++F++ SF+ASDAA+ AMNGQ+LCNRP+ VSYA+KKD++GE
Sbjct 126 ILQTPKIMWDPDTGNSKGYSFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Query 185 RHGSAAERLLAA 196
RHGSAAERLLAA
Sbjct 186 RHGSAAERLLAA 197
> tpv:TP02_0374 spliceosome associated protein; K12831 splicing
factor 3B subunit 4
Length=290
Score = 273 bits (699), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 124/197 (62%), Positives = 161/197 (81%), Gaps = 2/197 (1%)
Query 2 DIAQVFERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEF 61
DI ++ RNQEATLY+GN+D Q DE+LLWE F QAG V+ +N+P+DKVTG HQG+ FVE+
Sbjct 7 DILSLYNRNQEATLYIGNLDLQADEELLWEFFMQAGRVKSINVPRDKVTGQHQGFGFVEY 66
Query 62 ESETDADFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFS 121
E+E DAD+ALK++ VKLY KPL+L+KA+ D+ +VGA LFVGNLD ++DE++L DTFS
Sbjct 67 ETEVDADYALKILNFVKLYHKPLKLNKASKDKEIREVGAKLFVGNLDDEVDERLLHDTFS 126
Query 122 SFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDT 181
+FG V+SAK++R +G K +A VS + FEASDAAL MNGQFLCN+P+HVSYAYK+DT
Sbjct 127 AFGRVLSAKMVRSETSG--KTYAIVSFDDFEASDAALRTMNGQFLCNKPIHVSYAYKEDT 184
Query 182 RGERHGSAAERLLAANR 198
+GERHG AAERL+A+ R
Sbjct 185 KGERHGGAAERLIASKR 201
> cel:C08B11.6 actin; Spliceosome-Associated Protein family member
(sap-49); K12831 splicing factor 3B subunit 4
Length=388
Score = 264 bits (675), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 118/192 (61%), Positives = 158/192 (82%), Gaps = 1/192 (0%)
Query 6 VFERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESET 65
+ ERNQ+AT+YVG +D +V E +LWEL QAG V VN+PKD+VT HQG+ FVEF E
Sbjct 6 IVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEE 65
Query 66 DADFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFSSFGN 125
DAD+A+K++ M+KLYGKP++++KA+ + DVGAN+FVGNLDP++DEK+L+DTFS+FG
Sbjct 66 DADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGV 125
Query 126 VVS-AKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGE 184
++ K+MRD ++G SKGFAF++ SFEASD AL AMNGQFLCNR + VSYA+K+D++GE
Sbjct 126 ILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGE 185
Query 185 RHGSAAERLLAA 196
RHG+AAER+LAA
Sbjct 186 RHGTAAERMLAA 197
> xla:734673 hypothetical protein MGC116464
Length=391
Score = 263 bits (673), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 119/191 (62%), Positives = 157/191 (82%), Gaps = 1/191 (0%)
Query 8 ERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDA 67
+RNQEA++Y+GN+D+QV+E++LWE QAG V VN+P+DKV+G HQGY FVEF++E DA
Sbjct 6 QRNQEASIYIGNLDSQVNEEILWECMLQAGPVLSVNMPRDKVSGFHQGYGFVEFKTEEDA 65
Query 68 DFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVV 127
D+ALK+M M+KLY KP+R +KA D++ DVGANLFVGNL P++DEK+LFDTFS FGN++
Sbjct 66 DYALKVMNMIKLYNKPIRCNKATTDKKIHDVGANLFVGNLAPEVDEKMLFDTFSQFGNLI 125
Query 128 SA-KVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGERH 186
S K+M+DPE+G SKGFAFVS +SF+ +D A+ +MNGQF N+ + V YAYKKD+ GER+
Sbjct 126 STPKIMKDPESGGSKGFAFVSFDSFDGADHAIQSMNGQFFYNKQIVVQYAYKKDSNGERY 185
Query 187 GSAAERLLAAN 197
GS AER AAN
Sbjct 186 GSEAERKRAAN 196
> pfa:PF14_0194 spliceosome-associated protein, putative; K12831
splicing factor 3B subunit 4
Length=484
Score = 248 bits (632), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 113/197 (57%), Positives = 157/197 (79%), Gaps = 1/197 (0%)
Query 2 DIAQVFERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEF 61
+I+ ++ERN EATLY+ N+DAQVDE++L ELF Q G V+ V+IP+DK+ G H GY FVE+
Sbjct 9 EISHIYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEY 68
Query 62 ESETDADFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFS 121
E E + ++A ++ M KL+GK LR +KA D+R+FDVGANLF+GNLD ++DEK+LFD FS
Sbjct 69 EYEYECEYAANILNMTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEKMLFDIFS 128
Query 122 SFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDT 181
SFG +++ KVMR+ E SKG F+S ++FE+SD A+ MN QF+CN+ VH+SYA+KKD+
Sbjct 129 SFGQIMTVKVMRN-EDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDS 187
Query 182 RGERHGSAAERLLAANR 198
+GERHG+AAER +AAN+
Sbjct 188 KGERHGTAAERFIAANK 204
> cpv:cgd6_4490 U2 snRNP. Hsh49p, RRM domain containing protein
; K12831 splicing factor 3B subunit 4
Length=216
Score = 225 bits (574), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 98/196 (50%), Positives = 150/196 (76%), Gaps = 1/196 (0%)
Query 2 DIAQVFERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEF 61
+I ++ERNQEATLY GN++ +VDE++L ELF+Q G V+ V+IP+DKVTG H G+ F+EF
Sbjct 12 EIQPIYERNQEATLYCGNLENKVDEEMLAELFSQCGPVKSVHIPRDKVTGHHSGFGFIEF 71
Query 62 ESETDADFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFS 121
E +D ++A K+M +KL+ K +R KA++DR+ D+GANL+VGNL P++DEK LF FS
Sbjct 72 EFVSDVEYAQKVMNSIKLFTKQIRCCKASNDRKPLDIGANLYVGNLSPEIDEKFLFYLFS 131
Query 122 SFGNVVSAKVMRDPETGVS-KGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKD 180
+FG ++S K++ + ++ S K AF++ SF+ SD+A+ A+NGQF CN+ + VSYA+K++
Sbjct 132 NFGKILSLKIVGNDQSSQSPKNSAFINFSSFQESDSAIQALNGQFFCNQQISVSYAFKQN 191
Query 181 TRGERHGSAAERLLAA 196
++ E+HG+ AERLL +
Sbjct 192 SKNEKHGNYAERLLES 207
> hsa:8761 PABPC4, APP-1, APP1, FLJ43938, PABP4, iPABP; poly(A)
binding protein, cytoplasmic 4 (inducible form); K13126 polyadenylate-binding
protein
Length=660
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 110/182 (60%), Gaps = 6/182 (3%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ + V E +L+E F+ AG V + + +D +T GYA+V F+ DA+ AL
Sbjct 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAK 130
M + GKP+R+ + D R VG N+F+ NLD +D K L+DTFS+FGN++S K
Sbjct 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query 131 VMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVS-YAYKKDTRGERHGSA 189
V+ D E G SKG+AFV E+ EA+D A+ MNG L +R V V + +K+ E A
Sbjct 130 VVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 187
Query 190 AE 191
E
Sbjct 188 KE 189
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 20/185 (10%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+Y+ N +VD++ L ELF+Q G V + +D G +G+ FV +E DA+ A++ M
Sbjct 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query 75 GMVKLYGKPL-------RLSKAAHDRRTFDV----------GANLFVGNLDPDLDEKVLF 117
++ GK + ++ + A +R F+ G NL++ NLD +D++ L
Sbjct 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query 118 DTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAY 177
FS FG++ SAKVM E G SKGF FV S E + A+ MNG+ + ++P++V+ A
Sbjct 312 KEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query 178 KKDTR 182
+K+ R
Sbjct 370 RKEER 374
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 10/175 (5%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+++ N+D +D L++ F+ G + + D+ +GYAFV FE++ AD A++ M
Sbjct 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query 75 GMVKLYGKPLRLSK-AAHDRRTFDVGA------NLFVGNLDPDLDEKVLFDTFSSFGNVV 127
+ L + + + + + R ++GA N+++ N ++D++ L + FS FG +
Sbjct 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query 128 SAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTR 182
S KVMRDP G SKGF FVS E E ++ A+ MNG+ + + + V A KK R
Sbjct 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVER 272
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query 7 FERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETD 66
R Q LY+ N+D +D++ L + F+ G + + + G +G+ FV F S +
Sbjct 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEE 345
Query 67 ADFALKLMGMVKLYGKPLRLSKA 89
A A+ M + KPL ++ A
Sbjct 346 ATKAVTEMNGRIVGSKPLYVALA 368
> mmu:230721 Pabpc4, MGC11665, MGC6685; poly(A) binding protein,
cytoplasmic 4; K13126 polyadenylate-binding protein
Length=660
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 110/182 (60%), Gaps = 6/182 (3%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ + V E +L+E F+ AG V + + +D +T GYA+V F+ DA+ AL
Sbjct 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAK 130
M + GKP+R+ + D R VG N+F+ NLD +D K L+DTFS+FGN++S K
Sbjct 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query 131 VMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVS-YAYKKDTRGERHGSA 189
V+ D E G SKG+AFV E+ EA+D A+ MNG L +R V V + +K+ E A
Sbjct 130 VVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 187
Query 190 AE 191
E
Sbjct 188 KE 189
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 20/185 (10%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+Y+ N +VD+ L ELF+Q G V + +D +G +G+ FV +E DA+ A++ M
Sbjct 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query 75 GMVKLYGKPL-------RLSKAAHDRRTFDV----------GANLFVGNLDPDLDEKVLF 117
++ GK + ++ + A +R F+ G NL++ NLD +D++ L
Sbjct 252 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query 118 DTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAY 177
FS FG++ SAKVM E G SKGF FV S E + A+ MNG+ + ++P++V+ A
Sbjct 312 REFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query 178 KKDTR 182
+K+ R
Sbjct 370 RKEER 374
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 10/175 (5%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+++ N+D +D L++ F+ G + + D+ +GYAFV FE++ AD A++ M
Sbjct 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query 75 GMVKLYGKPLRLSK-AAHDRRTFDVGA------NLFVGNLDPDLDEKVLFDTFSSFGNVV 127
+ L + + + + + R ++GA N+++ N ++D+ L + FS FG +
Sbjct 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 218
Query 128 SAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTR 182
S KVMRD +G SKGF FVS E E ++ A+ MNG+ + + + V A KK R
Sbjct 219 SVKVMRD-SSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVER 272
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query 7 FERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETD 66
R Q LY+ N+D +D++ L F+ G + + + G +G+ FV F S +
Sbjct 288 ISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEE 345
Query 67 ADFALKLMGMVKLYGKPL 84
A A+ M + KPL
Sbjct 346 ATKAVTEMNGRIVGSKPL 363
> mmu:100503296 polyadenylate-binding protein 4-like
Length=234
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 108/181 (59%), Gaps = 4/181 (2%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ + V E +L+E F+ AG V + + +D +T GYA+V F+ DA+ AL
Sbjct 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDRRTFDVG-ANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKV 131
M + GKP+R+ + D G N+F+ NLD +D K L+DTFS+FGN++S KV
Sbjct 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query 132 MRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVS-YAYKKDTRGERHGSAA 190
+ D E G SKG+AFV E+ EA+D A+ MNG L +R V V + +K+ E A
Sbjct 131 VCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK 188
Query 191 E 191
E
Sbjct 189 E 189
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 74/139 (53%), Gaps = 10/139 (7%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
+++ N+D +D L++ F+ G + + D+ +GYAFV FE++ AD A++
Sbjct 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIE 156
Query 73 LMGMVKLYGKPLRLSK-AAHDRRTFDVGA------NLFVGNLDPDLDEKVLFDTFSSFGN 125
M + L + + + + + R ++GA N+++ N ++D+ L + FS FG
Sbjct 157 KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGK 216
Query 126 VVSAKVMRDPETGVSKGFA 144
+S KVMRD +G SKGF
Sbjct 217 TLSVKVMRD-SSGKSKGFG 234
> cpv:cgd6_3010 poly(a)-binding protein fabm ; K13126 polyadenylate-binding
protein
Length=746
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++DA V E +L+E+F VV V I +D +T GYA+V + S DA+ AL
Sbjct 12 ASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALD 71
Query 73 LMGMVKLYGKPLRLSKAAHD---RRTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSA 129
+ + G+P R+ D RR D N+FV NLD +D K LFDTFS FGN++S
Sbjct 72 TLNFTCIRGRPCRIMWCLRDPASRRNND--GNVFVKNLDKSIDNKTLFDTFSLFGNIMSC 129
Query 130 KVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTR 182
K+ D E G S G+ F+ E +++ A++ +NG L +RP++V KK R
Sbjct 130 KIATDVE-GKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAER 181
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 14/171 (8%)
Query 9 RNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDAD 68
RN + ++V N+D +D L++ F+ G + I D V G GY F+ FE A
Sbjct 96 RNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATD-VEGKSLGYGFIHFEHADSAK 154
Query 69 FALKLMGMVKLYGKPLRLSKAAHDRRTFD----VGANLFVGNLDPDLDEKVLFDTFSSFG 124
A+ + L +P+ + K F N++V ++ E +L+ F +G
Sbjct 155 EAISRLNGAVLGDRPIYVGKFQKKAERFSEKDKTFTNVYVKHIPKSWTEDLLYKIFGVYG 214
Query 125 NVVSAKVMRDPETGVSKG--FAFVSMESFEASDAALAAMNGQFLCNRPVHV 173
+ S + D SKG F FV+ E+ +++ AA+AA++ + PV V
Sbjct 215 KISSLVLQSD-----SKGRPFGFVNFENPDSAKAAVAALHNALVT--PVGV 258
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query 88 KAAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVS 147
K +H R G NL+V NL ++E+ L F FG V S + D E+GVS+GF FVS
Sbjct 354 KESHQRYQ---GVNLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTD-ESGVSRGFGFVS 409
Query 148 MESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGER 185
S + + A+ M+ + + +P++V +K+ R R
Sbjct 410 FLSPDEATKAITEMHLKLVRGKPLYVGLHERKEQRALR 447
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 0/81 (0%)
Query 98 VGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAA 157
V A+L+VG+LD D+ E +L++ F+S V S ++ RD T S G+A+V+ S ++ A
Sbjct 10 VSASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERA 69
Query 158 LAAMNGQFLCNRPVHVSYAYK 178
L +N + RP + + +
Sbjct 70 LDTLNFTCIRGRPCRIMWCLR 90
> dre:321035 pabpc4, cb12, sb:cb12; poly(A) binding protein, cytoplasmic
4 (inducible form); K13126 polyadenylate-binding
protein
Length=637
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 108/181 (59%), Gaps = 5/181 (2%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ + E +L+E F+ AG V + + +D +T GYA+V F+ DA+ AL
Sbjct 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query 73 LMGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAK 130
M + GKP+R+ + D R VG N+F+ NLD +D K L+DTFS+FGN++S K
Sbjct 72 TMNFDVVKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 130
Query 131 VMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGERHGSAA 190
V+ D E G SKG+AFV E+ +A+D A+ MNG L +R V V + R G+ A
Sbjct 131 VVCD-ENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKA 188
Query 191 E 191
+
Sbjct 189 K 189
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 20/185 (10%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+Y+ N +D+ L ELF + G V + D TG +G+ FV +E DA+ A++ M
Sbjct 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEM 252
Query 75 GMVKLYGKPL-------RLSKAAHDRRTFDV----------GANLFVGNLDPDLDEKVLF 117
+L GK + ++ + A +R F+ G NL++ NLD +D++ L
Sbjct 253 NGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 312
Query 118 DTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAY 177
FS FG++ SAKVM E G SKGF FV S E + A+ MNG+ + ++P++V+ A
Sbjct 313 KEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 370
Query 178 KKDTR 182
+K+ R
Sbjct 371 RKEER 375
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 94/175 (53%), Gaps = 10/175 (5%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+++ N+D +D L++ F+ G + + D+ +GYAFV FE++ AD A++ M
Sbjct 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 159
Query 75 GMVKLYGKPLRLSK-AAHDRRTFDVGA------NLFVGNLDPDLDEKVLFDTFSSFGNVV 127
+ L + + + + + R ++GA N+++ N D+D++ L + F +G +
Sbjct 160 NGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTL 219
Query 128 SAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTR 182
S KVM DP TG S+GF FVS E E ++ A+ MNG L + V V A KK R
Sbjct 220 SVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMER 273
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query 7 FERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETD 66
R Q LY+ N+D +D++ L + F+ G + + ++ G +G+ FV F S +
Sbjct 289 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEE 346
Query 67 ADFALKLMGMVKLYGKPLRLSKA 89
A A+ M + KPL ++ A
Sbjct 347 ATKAVTEMNGRIVGSKPLYVALA 369
> xla:444284 pabpc4, MGC80927, PABP, ePAB, ePABP; poly(A) binding
protein, cytoplasmic 4 (inducible form); K13126 polyadenylate-binding
protein
Length=626
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 102/163 (62%), Gaps = 5/163 (3%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ V E +L+E F+ AG V + + +D +T GYA+V F+ DA+ AL
Sbjct 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAK 130
M + GKP+R+ + D R VG N+F+ NLD +D K L+DTFS+FGN++S K
Sbjct 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query 131 VMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHV 173
V+ D E G SKG+AFV E+ +A+D A+ MNG L +R V V
Sbjct 130 VVCD-ENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 98/185 (52%), Gaps = 20/185 (10%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+Y+ N +D++ L E F++ G V + D +G +G+ FV FE DA+ A+ M
Sbjct 193 VYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDP-SGKSKGFGFVSFERHEDANKAVDDM 251
Query 75 GMVKLYGKPL-------RLSKAAHDRRTFDV----------GANLFVGNLDPDLDEKVLF 117
+ GK + ++ + A +R F+ G NL++ NLD +D++ L
Sbjct 252 NGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query 118 DTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAY 177
FS FG++ SAKVM E G SKGF FV S E + A+ MNG+ + ++P++V+ A
Sbjct 312 KEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query 178 KKDTR 182
+K+ R
Sbjct 370 RKEER 374
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 97/175 (55%), Gaps = 10/175 (5%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+++ N+D +D L++ F+ G + + D+ +GYAFV FE++ AD A++ M
Sbjct 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query 75 GMVKLYGKPLRLSKAAHDR-RTFDVGA------NLFVGNLDPDLDEKVLFDTFSSFGNVV 127
+ L + + + + R R ++GA N+++ N D+D++ L +TFS +G +
Sbjct 159 NGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTL 218
Query 128 SAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTR 182
S KVM DP +G SKGF FVS E E ++ A+ MNG+ + + + V A KK R
Sbjct 219 SVKVMTDP-SGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVER 272
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query 7 FERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETD 66
R Q LY+ N+D +D++ L + F+ G + + ++ G +G+ FV F S +
Sbjct 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEE 345
Query 67 ADFALKLMGMVKLYGKPLRLSKA 89
A A+ M + KPL ++ A
Sbjct 346 ATKAVTEMNGRIVGSKPLYVALA 368
> dre:327625 pabpc1l, fi20g03, pab-2, wu:fi20g03, zgc:55855; poly(A)
binding protein, cytoplasmic 1-like; K13126 polyadenylate-binding
protein
Length=620
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 108/180 (60%), Gaps = 5/180 (2%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ A V E +L++ F+ AG + + + +D +T GYA++ F+ DA+ AL
Sbjct 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAK 130
M + G+P+R+ + D R VG N+F+ N+D +D K L+DTFS+FGN++S K
Sbjct 71 TMNYEVIKGRPIRIMWSQRDPGLRKSGVG-NIFIKNMDESIDNKALYDTFSAFGNILSCK 129
Query 131 VMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGERHGSAA 190
V+ D E G SKG+ FV E+ EA++ A+ MNG L +R V V + + R G+ A
Sbjct 130 VVCD-ENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKA 187
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 20/185 (10%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+Y+ N +D + L +FT+ G V + D+ G +G+ FV F + DA A+ M
Sbjct 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDE-RGRSRGFGFVNFVNHGDARRAVTEM 251
Query 75 GMVKLYGKPL-------RLSKAAHDRRTFDV----------GANLFVGNLDPDLDEKVLF 117
+L G+ L RL + +R F+ G NL+V NLD +D++ L
Sbjct 252 NGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLR 311
Query 118 DTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAY 177
F+ +G + SAKVM D G S+GF FV S E + A+ MNG+ + +P++V+ A
Sbjct 312 KEFAPYGTITSAKVMTD--GGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query 178 KKDTR 182
+K+ R
Sbjct 370 RKEER 374
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 13/180 (7%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+++ N+D +D L++ F+ G + + D+ +GY FV FE++ A+ A++ M
Sbjct 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAANRAIETM 158
Query 75 GMVKLYGKPLRLSK-AAHDRRTFDVGA------NLFVGNLDPDLDEKVLFDTFSSFGNVV 127
+ L + + + + R ++GA N+++ N D+D + L + F+ FG +
Sbjct 159 NGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTL 218
Query 128 SAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGERHG 187
S VM D E G S+GF FV+ + + A+ MNG+ L R ++V A K R ER G
Sbjct 219 SVCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQK---RLERQG 274
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query 7 FERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAH-QGYAFVEFESET 65
+R Q LYV N+D +D++ L + F G + + D G H +G+ FV F S
Sbjct 288 IQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTD---GGHSRGFGFVCFSSPE 344
Query 66 DADFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNL 107
+A A+ M + KPL ++ A + N ++ L
Sbjct 345 EATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYIQRL 386
> mmu:18458 Pabpc1, PABP, Pabp1, PabpI, Pabpl1, ePAB; poly(A)
binding protein, cytoplasmic 1; K13126 polyadenylate-binding
protein
Length=636
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 6/182 (3%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ V E +L+E F+ AG + + + +D +T GYA+V F+ DA+ AL
Sbjct 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAK 130
M + GKP+R+ + D R VG N+F+ NLD +D K L+DTFS+FGN++S K
Sbjct 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query 131 VMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVS-YAYKKDTRGERHGSA 189
V+ D E G SKG+ FV E+ EA++ A+ MNG L +R V V + +K+ E A
Sbjct 130 VVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187
Query 190 AE 191
E
Sbjct 188 KE 189
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 102/197 (51%), Gaps = 21/197 (10%)
Query 4 AQVFERNQEAT-LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFE 62
A++ R +E T +Y+ N +D++ L ELF + G V + D+ +G +G+ FV FE
Sbjct 181 AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFE 239
Query 63 SETDADFALKLMGMVKLYGKPLRLSKA-----------------AHDRRTFDVGANLFVG 105
DA A+ M +L GK + + +A DR T G NL+V
Sbjct 240 RHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVK 299
Query 106 NLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQF 165
NLD +D++ L FS FG + SAKVM E G SKGF FV S E + A+ MNG+
Sbjct 300 NLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query 166 LCNRPVHVSYAYKKDTR 182
+ +P++V+ A +K+ R
Sbjct 358 VATKPLYVALAQRKEER 374
> hsa:26986 PABPC1, PAB1, PABP, PABP1, PABPC2, PABPL1; poly(A)
binding protein, cytoplasmic 1; K13126 polyadenylate-binding
protein
Length=636
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 6/182 (3%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ V E +L+E F+ AG + + + +D +T GYA+V F+ DA+ AL
Sbjct 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAK 130
M + GKP+R+ + D R VG N+F+ NLD +D K L+DTFS+FGN++S K
Sbjct 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query 131 VMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVS-YAYKKDTRGERHGSA 189
V+ D E G SKG+ FV E+ EA++ A+ MNG L +R V V + +K+ E A
Sbjct 130 VVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187
Query 190 AE 191
E
Sbjct 188 KE 189
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 21/197 (10%)
Query 4 AQVFERNQEAT-LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFE 62
A++ R +E T +Y+ N +D++ L +LF + G V + D+ +G +G+ FV FE
Sbjct 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFE 239
Query 63 SETDADFALKLMGMVKLYGKPLRLSKA-----------------AHDRRTFDVGANLFVG 105
DA A+ M +L GK + + +A DR T G NL+V
Sbjct 240 RHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVK 299
Query 106 NLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQF 165
NLD +D++ L FS FG + SAKVM E G SKGF FV S E + A+ MNG+
Sbjct 300 NLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query 166 LCNRPVHVSYAYKKDTR 182
+ +P++V+ A +K+ R
Sbjct 358 VATKPLYVALAQRKEER 374
> dre:606498 pabpc1a, pabpc1, wu:fb16a02, wu:fi19b08, wu:fj12d09,
wu:fj61f06, zgc:109879; poly A binding protein, cytoplasmic
1 a; K13126 polyadenylate-binding protein
Length=634
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 108/182 (59%), Gaps = 6/182 (3%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ V E +L+E F+ AG + + + +D +T GYA+V F+ DA+ AL
Sbjct 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAK 130
M + G+P+R+ + D R VG N+F+ NLD +D K L+DTFS+FGN++S K
Sbjct 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query 131 VMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVS-YAYKKDTRGERHGSA 189
V+ D E G SKG+ FV E+ EA++ A+ MNG L +R V V + +K+ E A
Sbjct 130 VVCD-ENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARA 187
Query 190 AE 191
E
Sbjct 188 KE 189
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 101/197 (51%), Gaps = 21/197 (10%)
Query 4 AQVFERNQEAT-LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFE 62
A++ R +E T +Y+ N +D++ L E+F + G + + D +G +G+ FV FE
Sbjct 181 AEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD-SGKSKGFGFVSFE 239
Query 63 SETDADFALKLMGMVKLYGKPLRLSKA-----------------AHDRRTFDVGANLFVG 105
DA A+ M ++ GK + + +A DR T G NL+V
Sbjct 240 RHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVK 299
Query 106 NLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQF 165
NLD LD++ L FS FG + SAKVM E G SKGF FV S E + A+ MNG+
Sbjct 300 NLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query 166 LCNRPVHVSYAYKKDTR 182
+ +P++V+ A +K+ R
Sbjct 358 VATKPLYVALAQRKEER 374
> xla:432140 pabpc1-b, MGC130736, MGC79060, pab1, pabp, pabp1,
pabpc2; poly(A) binding protein, cytoplasmic 1; K13126 polyadenylate-binding
protein
Length=633
Score = 122 bits (306), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 6/182 (3%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ V E +L+E F+ AG + + + +D +T GYA+V F+ DA+ AL
Sbjct 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAK 130
M + GKP+R+ + D R VG N+F+ NLD +D K L+DTFS+FGN++S K
Sbjct 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query 131 VMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVS-YAYKKDTRGERHGSA 189
V+ D E G SKG+ FV E+ EA++ A+ MNG L +R V V + +K+ E A
Sbjct 130 VVCD-ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187
Query 190 AE 191
E
Sbjct 188 KE 189
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 21/197 (10%)
Query 4 AQVFERNQEAT-LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFE 62
A++ R +E T +Y+ N +D++ L E F Q G V + D G +G+ FV FE
Sbjct 181 AELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD-HGKSRGFGFVSFE 239
Query 63 SETDADFALKLMGMVKLYGKPLRLSKA-----------------AHDRRTFDVGANLFVG 105
DA A+ M L GK + + +A DR T G NL+V
Sbjct 240 RHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVK 299
Query 106 NLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQF 165
NLD +D++ L F+ FG++ SAKVM E G SKGF FV S E + A+ MNG+
Sbjct 300 NLDDGIDDERLRKEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query 166 LCNRPVHVSYAYKKDTR 182
+ +P++V+ A +K+ R
Sbjct 358 VATKPLYVALAQRKEER 374
> dre:393856 pabpc1b, MGC77608, pabpc1, zgc:77608; poly A binding
protein, cytoplasmic 1 b; K13126 polyadenylate-binding protein
Length=634
Score = 122 bits (306), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 108/182 (59%), Gaps = 6/182 (3%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ V E +L+E F+ AG + + + +D +T GYA+V F+ DA+ AL
Sbjct 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAK 130
M + G+P+R+ + D R VG N+F+ NLD +D K L+DTFS+FGN++S K
Sbjct 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query 131 VMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVS-YAYKKDTRGERHGSA 189
V+ D E G SKG+ FV E+ EA++ A+ MNG L +R V V + +K+ E A
Sbjct 130 VVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187
Query 190 AE 191
E
Sbjct 188 KE 189
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 21/197 (10%)
Query 4 AQVFERNQEAT-LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFE 62
A++ R +E T +Y+ N +D+D L ++F++ G + + D+ G +G+ FV FE
Sbjct 181 AELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFE 239
Query 63 SETDADFALKLMGMVKLYGKPLRLSKA-----------------AHDRRTFDVGANLFVG 105
DA A+ M ++ GK + + +A DR T G NL+V
Sbjct 240 RHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVK 299
Query 106 NLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQF 165
NLD +D++ L FS FG + SAKVM D G SKGF FV S E + A+ MNG+
Sbjct 300 NLDDGIDDERLRKEFSPFGTITSAKVMMD--GGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query 166 LCNRPVHVSYAYKKDTR 182
+ +P++V+ A +K+ R
Sbjct 358 VATKPLYVALAQRKEER 374
> sce:YOR319W HSH49; Hsh49p; K12831 splicing factor 3B subunit
4
Length=213
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 115/198 (58%), Gaps = 22/198 (11%)
Query 14 TLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKL 73
T+YVGNID ++ ++ L+ELF Q V + PKDKV A+QGYAF+EF ++ DA +A+K+
Sbjct 10 TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKI 69
Query 74 M-GMVKLYGKPLRLSKAAHDRRTFDVGAN-----------LFVGNLDPDLDEKVLFDTFS 121
M V+LY + +++ + + T ++ +N LF+ NL +D L F+
Sbjct 70 MNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNLADSIDSDQLVKIFN 129
Query 122 SFGNVVSAKVMRDPET-GVSKG---FAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAY 177
FG K++R+PE +S G A+V E FE +D A+ ++N Q + N + V YA+
Sbjct 130 KFG-----KLIREPEIFYLSNGKLKCAYVYFEDFEKADLAIKSLNNQLVANNRITVDYAF 184
Query 178 KKDTRGE-RHGSAAERLL 194
K++ +G ++G +RLL
Sbjct 185 KENGKGNAKYGDDVDRLL 202
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 0/67 (0%)
Query 97 DVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDA 156
D G ++VGN+DP + ++ L++ F V+ K +D +G+AF+ + +
Sbjct 6 DSGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQY 65
Query 157 ALAAMNG 163
A+ MN
Sbjct 66 AIKIMNN 72
> xla:379896 pabpc1-a, MGC53109, pab1, pabp, pabp1, pabpc1, pabpc2;
poly(A) binding protein, cytoplasmic 1; K13126 polyadenylate-binding
protein
Length=633
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 108/182 (59%), Gaps = 6/182 (3%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ V E +L+E F+ AG + + + +D +T GYA+V F+ DA+ AL
Sbjct 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAK 130
M + G+P+R+ + D R VG N+F+ NLD +D K L+DTFS+FGN++S K
Sbjct 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query 131 VMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVS-YAYKKDTRGERHGSA 189
V+ D E G SKG+ FV E+ EA++ A+ MNG L +R V V + +K+ E A
Sbjct 130 VVCD-ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187
Query 190 AE 191
E
Sbjct 188 KE 189
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 21/197 (10%)
Query 4 AQVFERNQEAT-LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFE 62
A++ R +E T +Y+ N ++++ L E+F + G V + D G +G+ FV FE
Sbjct 181 AELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFE 239
Query 63 SETDADFALKLMGMVKLYGKPLRLSKAA-----------------HDRRTFDVGANLFVG 105
DA A+ M + GK + + +A DR T G NL+V
Sbjct 240 RHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVK 299
Query 106 NLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQF 165
NLD +D++ L F FG + SAKVM E G SKGF FV S E + A+ MNG+
Sbjct 300 NLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query 166 LCNRPVHVSYAYKKDTR 182
+ +P++V+ A +K+ R
Sbjct 358 VATKPLYVALAQRKEER 374
> hsa:80336 PABPC1L, C20orf119, FLJ11840, FLJ30809, FLJ42053,
PABPC1L1, dJ1069P2.3, ePAB; poly(A) binding protein, cytoplasmic
1-like; K13126 polyadenylate-binding protein
Length=614
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 107/184 (58%), Gaps = 8/184 (4%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ V E +L+E F+ AG + + + +D T GYA++ F+ DA+ AL
Sbjct 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAK 130
M L G+P+R+ + D R VG N+F+ NL+ +D K L+DTFS+FGN++S K
Sbjct 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query 131 VMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGERHGSAA 190
V D E G S+GF FV E+ EA+ A+ MNG L +R V V + +K +R ER
Sbjct 130 VACD-EHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAELG 184
Query 191 ERLL 194
R L
Sbjct 185 ARAL 188
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 93/185 (50%), Gaps = 20/185 (10%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+YV N+ VDE L +LF+Q G + V + +D +G + + FV FE +A A+ M
Sbjct 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHM 251
Query 75 GMVKLYGKPL-----------------RLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLF 117
++ G+ L R + DR G NL+V NLD +D+ L
Sbjct 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query 118 DTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAY 177
FS +G + SAKVM E G SKGF FV S E + A+ MNG+ + +P++V+ A
Sbjct 312 KEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query 178 KKDTR 182
+K+ R
Sbjct 370 RKEER 374
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 13/186 (6%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+++ N++ +D L++ F+ G + + D+ +G+ FV FE+ A A+ M
Sbjct 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query 75 GMVKLYGKPLRLSKAAHDR-RTFDVGA------NLFVGNLDPDLDEKVLFDTFSSFGNVV 127
+ L + + + R R ++GA N++V NL D+DE+ L D FS FG ++
Sbjct 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query 128 SAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGERHG 187
S KVMRD +G S+ F FV+ E E + A+ MNG+ + R + YA + R ER
Sbjct 219 SVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGR---LLYAGRAQKRVERQN 274
Query 188 SAAERL 193
R
Sbjct 275 ELKRRF 280
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query 7 FERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAH-QGYAFVEFESET 65
R Q LYV N+D +D+D L + F+ GV+ + G H +G+ FV F S
Sbjct 288 LRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV---MTEGGHSKGFGFVCFSSPE 344
Query 66 DADFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNLD 108
+A A+ M + KPL ++ A + N ++ L
Sbjct 345 EATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLS 387
> dre:100333577 splicing factor 3b, subunit 4, 49kD-like
Length=101
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 68/83 (81%), Gaps = 0/83 (0%)
Query 6 VFERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESET 65
+ ERNQ+AT+YVG +D +V E LLWELF QAG V ++PKD+VTG HQGY FVEF SE
Sbjct 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query 66 DADFALKLMGMVKLYGKPLRLSK 88
DAD+A+K+M M+KLYGKP+R++K
Sbjct 66 DADYAIKIMNMIKLYGKPIRVNK 88
> mmu:67543 Pabpc6, 4932702K14Rik, AI428050, MGC132900, Pabpc3;
poly(A) binding protein, cytoplasmic 6; K13126 polyadenylate-binding
protein
Length=643
Score = 119 bits (298), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 6/182 (3%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ V E +L+E F+ AG + + + +D++T GYA V F+ DA+ AL
Sbjct 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAK 130
M + GKP+R+ + D R VG N+FV NLD +D K L+DTFS+FGN++S K
Sbjct 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDRSIDSKTLYDTFSAFGNILSCK 129
Query 131 VMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVS-YAYKKDTRGERHGSA 189
V+ D E G SKG+ FV E+ E ++ A+ MNG FL + V V + ++D + E A
Sbjct 130 VVCD-ENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARA 187
Query 190 AE 191
E
Sbjct 188 KE 189
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 101/207 (48%), Gaps = 31/207 (14%)
Query 4 AQVFERNQEAT-LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFE 62
A++ R +E T +Y+ N+ +D++ L +LF + G V + D+ +G +G+ FV FE
Sbjct 181 AELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDE-SGKSKGFGFVSFE 239
Query 63 SETDADFALKLMGMVKLYGKPL---------------------------RLSKAAHDRRT 95
DA A++ M L GK + ++ + DR
Sbjct 240 RHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSV 299
Query 96 FDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASD 155
G NL+V NLD +D++ L FS FG + SAKV E G SKGF FV S E +
Sbjct 300 RCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTM--EGGRSKGFGFVCFSSPEEAT 357
Query 156 AALAAMNGQFLCNRPVHVSYAYKKDTR 182
A+ MNG+ + +P++V+ A +K+ R
Sbjct 358 KAVTEMNGKIVATKPLYVALAQRKEER 384
> ath:AT4G34110 PAB2; PAB2 (POLY(A) BINDING 2); RNA binding /
translation initiation factor; K13126 polyadenylate-binding
protein
Length=629
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query 14 TLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKL 73
+LYVG++D V + L++ F Q G V V + +D VT GY +V F + DA A++
Sbjct 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query 74 MGMVKLYGKPLRLSKAAHDRRTFDVGA-NLFVGNLDPDLDEKVLFDTFSSFGNVVSAKVM 132
+ + LYGKP+R+ + D GA N+F+ NLD +D K L DTFSSFGN+VS KV
Sbjct 97 LNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVA 156
Query 133 RDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTR 182
D +G SKG+ FV + E++ A+ +NG L ++ V+V ++ R
Sbjct 157 VD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQER 205
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 21/186 (11%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+YV N+ +D L F + G + + KD G +G+ FV FE+ DA A++ +
Sbjct 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESL 275
Query 75 GMVKLYGKPLRLSKAAH--DRRT----------------FDVGANLFVGNLDPDLDEKVL 116
K K + +A +R T F +NL+V NLDP + ++ L
Sbjct 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQ-SSNLYVKNLDPSISDEKL 334
Query 117 FDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYA 176
+ FS FG V S+KVMRDP G SKG FV+ + E + A++ ++G+ + ++P++V+ A
Sbjct 335 KEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 393
Query 177 YKKDTR 182
+K+ R
Sbjct 394 QRKEDR 399
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query 2 DIAQVFERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEF 61
++ + ++ Q + LYV N+D + ++ L E+F+ G V + +D G +G FV F
Sbjct 307 NLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAF 365
Query 62 ESETDADFALKLMGMVKLYGKPLRLSKA--AHDRR 94
+ +A A+ + + KPL ++ A DRR
Sbjct 366 ATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRR 400
> hsa:5042 PABPC3, PABP3, PABPL3, tPABP; poly(A) binding protein,
cytoplasmic 3; K13126 polyadenylate-binding protein
Length=631
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 104/182 (57%), Gaps = 6/182 (3%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ V E +L+E F+ AG + + I +D +T YA+V F+ DA+ AL
Sbjct 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAK 130
M + GKP+R+ + D R VG N+FV NLD ++ K L+DT S+FGN++S
Sbjct 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query 131 VMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHV-SYAYKKDTRGERHGSA 189
V+ D E G SKG+ FV E+ EA++ A+ MNG L R V V + +K+ E A
Sbjct 130 VVCD-ENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARA 187
Query 190 AE 191
E
Sbjct 188 KE 189
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 96/185 (51%), Gaps = 20/185 (10%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+Y+ N +D++ L +LF + G V + D+ +G +G+ FV FE DA A+ M
Sbjct 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query 75 GMVKLYGKPLRLSKAAHD-------RRTFDVG----------ANLFVGNLDPDLDEKVLF 117
+L GK + + +A +RTF+ NL+V NLD +D++ L
Sbjct 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311
Query 118 DTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAY 177
FS FG + SAKVM E G SKGF FV S E + A+ MNG+ + +P++V+ A
Sbjct 312 KAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query 178 KKDTR 182
+K+ R
Sbjct 370 RKEER 374
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 10/175 (5%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
++V N+D ++ L++ + G + N+ D+ +GY FV FE+ A+ A+K M
Sbjct 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query 75 GMVKLYGKPLRLSK-AAHDRRTFDVGA------NLFVGNLDPDLDEKVLFDTFSSFGNVV 127
+ L G+ + + + + R ++GA N+++ N D+D++ L D F FG +
Sbjct 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query 128 SAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTR 182
S KVM D E+G SKGF FVS E E + A+ MNG+ L + ++V A KK R
Sbjct 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query 9 RNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDAD 68
R Q LYV N+D +D++ L + F+ G + + + G +G+ FV F S +A
Sbjct 290 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEAT 347
Query 69 FALKLMGMVKLYGKPL 84
A+ M + KPL
Sbjct 348 KAVTEMNGRIVATKPL 363
> xla:443777 pabpc1l-b, MGC81363, epab, epabp-b, pabpc1l1; poly(A)
binding protein, cytoplasmic 1-like; K13126 polyadenylate-binding
protein
Length=629
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 106/178 (59%), Gaps = 5/178 (2%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LY+G++ V E +L+E F+ AG + + + +D T GYA++ F+ DA+ AL
Sbjct 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAK 130
M + G+P+R+ + D R VG N+F+ NLD +D K L+DTFS+FG+++S K
Sbjct 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NVFIKNLDDSIDNKALYDTFSAFGDILSCK 129
Query 131 VMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGERHGS 188
V+ D E G S+G+ FV E+ EA++ A+ MNG L +R V V + + R +G+
Sbjct 130 VVCD-EYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGA 185
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 96/180 (53%), Gaps = 13/180 (7%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+++ N+D +D L++ F+ G + + D+ +GY FV FE++ A+ A++ M
Sbjct 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEY--GSRGYGFVHFETQEAANRAIQTM 158
Query 75 GMVKLYGKPLRLSKAAHDR-RTFDVGA------NLFVGNLDPDLDEKVLFDTFSSFGNVV 127
+ L + + + R R + GA N+++ N D+D+K L + FS+FGN +
Sbjct 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTL 218
Query 128 SAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGERHG 187
S KVM D +G S+GF FV+ + E + A+ MNG+ + R V+V A K R ER G
Sbjct 219 SVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQK---RIERQG 274
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 20/185 (10%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+Y+ N +D+ L E+F+ G V + D +G +G+ FV + + +A A+ M
Sbjct 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEM 251
Query 75 GMVKLYGKPL-------RLSKAAHDRRTFDV----------GANLFVGNLDPDLDEKVLF 117
++ G+ + R+ + +R F+ G NL+V NLD +D+ L
Sbjct 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query 118 DTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAY 177
FS +G + S KVM E G SKGF FV S E + A+ MNG+ + +P++V+ A
Sbjct 312 KEFSPYGTITSTKVMT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query 178 KKDTR 182
+K+ R
Sbjct 370 RKEER 374
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query 9 RNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAH-QGYAFVEFESETDA 67
R Q LYV N+D +D+D L + F+ G + + G H +G+ FV F S +A
Sbjct 290 RYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKV---MTEGGHSKGFGFVCFSSPEEA 346
Query 68 DFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNL 107
A+ M + KPL ++ A + N ++ L
Sbjct 347 TKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
> mmu:18459 Pabpc2, PABP, PABP+, Pabp2; poly(A) binding protein,
cytoplasmic 2; K13126 polyadenylate-binding protein
Length=628
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 5/163 (3%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ V E +L+E F+ AG + + + +D +T GYA V FE DA+ AL
Sbjct 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAK 130
M + GKP+R+ + D R VG N+F+ NL+ +D K L+DTFS+FGN++S K
Sbjct 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVG-NVFIKNLNKTIDNKALYDTFSAFGNILSCK 129
Query 131 VMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHV 173
V+ D E G SKG FV E+ EA++ A+ MNG L +R V V
Sbjct 130 VVSD-ENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 170
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 97/185 (52%), Gaps = 20/185 (10%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+Y+ N ++D++ L LF + G + V + D+ G +G+ FV FE DA A+ M
Sbjct 193 VYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEM 251
Query 75 GMVKLYGKPLRLSKAAH--DRRT-----FDV----------GANLFVGNLDPDLDEKVLF 117
+L GK + + +A DR T F+ G NL+V NLD +D++ L
Sbjct 252 NGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQ 311
Query 118 DTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAY 177
FS FG + S KVM E G SKGF FV S E + A++ MNG+ + +P++V+ A
Sbjct 312 KEFSPFGTITSTKVMT--EGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
Query 178 KKDTR 182
+K+ R
Sbjct 370 RKEER 374
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 10/183 (5%)
Query 7 FERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETD 66
R+ +++ N++ +D L++ F+ G + + D+ +G+ FV FE+E
Sbjct 93 LRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDE--NGSKGHGFVHFETEEA 150
Query 67 ADFALKLMGMVKLYGKPLRLSK-AAHDRRTFDVGA------NLFVGNLDPDLDEKVLFDT 119
A+ A++ M + L + + + + + R ++G N+++ N +D++ L
Sbjct 151 AERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGL 210
Query 120 FSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKK 179
F FG ++S KVM D E G SKGF FVS E E + A+ MNG+ L + ++V A KK
Sbjct 211 FGRFGQILSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKK 269
Query 180 DTR 182
D R
Sbjct 270 DDR 272
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query 100 ANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALA 159
A+L+VG+L PD+ E +L++ FSS G ++S +V RD T S G+A V+ E ++ AL
Sbjct 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query 160 AMNGQFLCNRPVHVSYAYKKDTRGERHG 187
MN + +PV + ++ ++D R G
Sbjct 71 TMNFDVIKGKPVRIMWS-QRDPSLRRSG 97
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query 9 RNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDAD 68
R Q LYV N+D +D++ L + F+ G + + + G +G+ FV F S +A
Sbjct 290 RYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEAT 347
Query 69 FALKLMGMVKLYGKPLRLSKA 89
A+ M + KPL ++ A
Sbjct 348 KAVSEMNGRIVATKPLYVALA 368
> xla:398221 pabpc1l-a, MGC82273, ePAB, epabp-a, pabpc1l1; poly(A)
binding protein, cytoplasmic 1-like; K13126 polyadenylate-binding
protein
Length=629
Score = 116 bits (290), Expect = 5e-26, Method: Composition-based stats.
Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 5/178 (2%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LY+G++ V E +L+E F+ AG + + + +D T YA++ F+ DA+ AL
Sbjct 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAK 130
M + G+P+R+ + D R VG N+F+ NLD +D K L+DTFS+FGN++S K
Sbjct 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG-NVFIKNLDESIDNKALYDTFSAFGNILSCK 129
Query 131 VMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGERHGS 188
V+ D E G S+G+ FV E+ EA++ A+ MNG L +R V V + + R +G+
Sbjct 130 VVCD-EHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGA 185
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 10/177 (5%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
+++ N+D +D L++ F+ G + + D+ +GY FV FE+ A+ A++
Sbjct 99 GNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQ 156
Query 73 LMGMVKLYGKPLRLSKAAHDR-RTFDVGA------NLFVGNLDPDLDEKVLFDTFSSFGN 125
M + L + + + R R + GA N+++ N D+D+K L + FS+FGN
Sbjct 157 TMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGN 216
Query 126 VVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTR 182
+S KVM D ++G S+GF FV+ + E + A++ MNG+ + R ++V A K+ R
Sbjct 217 TLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIER 272
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 20/185 (10%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+Y+ N +D+ L E+F+ G V + D +G +G+ FV + + +A A+ M
Sbjct 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEM 251
Query 75 GMVKLYGKPL-------RLSKAAHDRRTFDV----------GANLFVGNLDPDLDEKVLF 117
++ G+ + R+ + + +R F+ G NL+V NLD +D+ L
Sbjct 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query 118 DTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAY 177
F +G + SAKVM E G SKGF FV S E + A+ MNG+ + +P++V+ A
Sbjct 312 KEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query 178 KKDTR 182
+K+ R
Sbjct 370 RKEER 374
Score = 35.8 bits (81), Expect = 0.094, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query 9 RNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDAD 68
R Q LYV N+D +D+D L + F G + + + G +G+ FV F S +A
Sbjct 290 RYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEAT 347
Query 69 FALKLMGMVKLYGKPLRLSKA 89
A+ M + KPL ++ A
Sbjct 348 KAVTEMNGRIVSTKPLYVALA 368
> mmu:93728 Pabpc5, C820015E17, MGC130340, MGC130341; poly(A)
binding protein, cytoplasmic 5; K13126 polyadenylate-binding
protein
Length=381
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query 17 VGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLMGM 76
VG++D V ED+L++ F AG +R I +D VT + GY +V F DA++AL M
Sbjct 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 80
Query 77 VKLYGKPLRLSKAAHDRRTFDVG-ANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKVMRDP 135
+ GKP RL + D R G N+F+ NLD +D + LF FS+FGN++S KV+ D
Sbjct 81 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDD 140
Query 136 ETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHV 173
SKG+A+V +S A++ A+ MNG L NR V+V
Sbjct 141 NG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 176
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 20/184 (10%)
Query 8 ERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDA 67
ER ++V N +D++ L +LF++ G V + +D TG +G+ FV +E+ A
Sbjct 193 ERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRD-ATGKSKGFGFVRYETHEAA 251
Query 68 DFALKLMGMVKLYGKPL-------RLSKAAHDRRTFD----------VGANLFVGNLDPD 110
A+ + + GK L ++ + A RR F+ G +++ NLD
Sbjct 252 QKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKNRPSGVPIYIKNLDET 311
Query 111 LDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRP 170
++++ L + FSSFG++ AKVM E G KGF V SFE + A+ MNG+ + ++
Sbjct 312 INDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEACKAVDEMNGRIIGSKT 369
Query 171 VHVS 174
+HV+
Sbjct 370 LHVT 373
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 17/181 (9%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
+++ N+D +D L+ LF+ G + + D +GYA+V F+S A+ A+
Sbjct 105 GNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIW 162
Query 73 LMGMVKLYGKPLRLSK-----------AAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFS 121
M V+L + + + + +R TF N+FV N D+D++ L FS
Sbjct 163 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRERATF---TNVFVKNFGDDIDDEKLNKLFS 219
Query 122 SFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDT 181
+G S KV+RD TG SKGF FV E+ EA+ A+ ++G+ + + + V A KK
Sbjct 220 EYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIE 278
Query 182 R 182
R
Sbjct 279 R 279
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 0/77 (0%)
Query 104 VGNLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNG 163
VG+LDPD+ E +L+ F G + ++ RDP T G+ +V+ ++ AL MN
Sbjct 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 80
Query 164 QFLCNRPVHVSYAYKKD 180
+ +P + ++ D
Sbjct 81 DLINGKPFRLMWSQPDD 97
> hsa:140886 PABPC5, FLJ51677, PABP5; poly(A) binding protein,
cytoplasmic 5; K13126 polyadenylate-binding protein
Length=382
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Query 17 VGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLMGM 76
VG++D V ED+L++ F AG +R I +D VT + GY +V F DA++AL M
Sbjct 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query 77 VKLYGKPLRLSKAAHDRRTFDVG-ANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKVMRDP 135
+ GKP RL + D R G N+F+ NLD +D + LF FS+FGN++S KV+ D
Sbjct 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD- 140
Query 136 ETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHV 173
+ G SKG+A+V +S A++ A+ MNG L NR V+V
Sbjct 141 DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 20/179 (11%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
++V NI +D++ L ELF + G V + +D +G +G+ FV +E+ A A+
Sbjct 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVL 257
Query 73 LMGMVKLYGKPLRLSKAAHD-----------------RRTFDVGANLFVGNLDPDLDEKV 115
+ + GK L + +A ++ G +++ NLD ++++
Sbjct 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
Query 116 LFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVS 174
L + FSSFG++ AKVM E G KGF V SFE + A+ MNG+ + ++P+HV+
Sbjct 318 LKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 17/181 (9%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
+++ N+D +D L+ LF+ G + + D +GYA+V F+S A+ A+
Sbjct 106 GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIW 163
Query 73 LMGMVKLYGKPLRLSK-----------AAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFS 121
M V+L + + + + DR TF N+FV N+ D+D++ L + F
Sbjct 164 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATF---TNVFVKNIGDDIDDEKLKELFC 220
Query 122 SFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDT 181
+G S KV+RD +G SKGF FV E+ EA+ A+ ++G+ + + ++V A KK
Sbjct 221 EYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIE 279
Query 182 R 182
R
Sbjct 280 R 280
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 0/77 (0%)
Query 104 VGNLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNG 163
VG+LDPD+ E +L+ F G + ++ RDP T G+ +V+ ++ AL MN
Sbjct 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query 164 QFLCNRPVHVSYAYKKD 180
+ +P + ++ D
Sbjct 82 DLINGKPFRLMWSQPDD 98
> hsa:132430 PABPC4L, DKFZp686J06116; poly(A) binding protein,
cytoplasmic 4-like; K13126 polyadenylate-binding protein
Length=428
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 106/183 (57%), Gaps = 8/183 (4%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ A V EDLL+ F+ G V + I +D+VT GYA+V F DA AL
Sbjct 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query 73 LMGMVKLYGKPLRLSKAAHD---RRTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSA 129
M + GK +RL + D RR+ +G N+F+ NLD +D K L++ FS+FG ++S+
Sbjct 128 TMNFDIIKGKSIRLMWSQRDAYLRRS-GIG-NVFIKNLDKSIDNKTLYEHFSAFGKILSS 185
Query 130 KVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVS-YAYKKDTRGERHGS 188
KVM D + SKG+AFV ++ A+D A+ MNG+ L V V + +KD E
Sbjct 186 KVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query 189 AAE 191
A+E
Sbjct 244 ASE 246
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 10/183 (5%)
Query 7 FERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETD 66
R+ +++ N+D +D L+E F+ G + + D +GYAFV F++++
Sbjct 150 LRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSA 207
Query 67 ADFALKLMGMVKLYGKPL-------RLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLFDT 119
AD A++ M L G + R + A R N+++ N D+D++ L D
Sbjct 208 ADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDV 267
Query 120 FSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKK 179
FS +G +S KVM D +G SKGF FVS +S EA+ A+ MNG+ + + + V A KK
Sbjct 268 FSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 326
Query 180 DTR 182
R
Sbjct 327 VER 329
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 94/183 (51%), Gaps = 20/183 (10%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
+Y+ N +D++ L ++F++ G V + D +G +G+ FV F+S A A++
Sbjct 248 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVE 306
Query 73 LMGMVKLYGKPL-------RLSKAAHDRRTFDV----------GANLFVGNLDPDLDEKV 115
M + G+ + ++ + A ++ F+ G L++ NLD +D++
Sbjct 307 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 366
Query 116 LFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSY 175
L + FSSFG++ KVM+ E G SKGF + S E + A+ MNG+ L ++P+ ++
Sbjct 367 LRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIAL 424
Query 176 AYK 178
A +
Sbjct 425 AQR 427
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query 1 ADIAQVFER--------NQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGA 52
A++ Q+FE+ Q LY+ N+D +D++ L F+ G + V + +++ G
Sbjct 331 AELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQ 388
Query 53 HQGYAFVEFESETDADFALKLMGMVKLYGKPLRLSKA 89
+G+ + F S DA A+ M L KPL ++ A
Sbjct 389 SKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
> ath:AT1G49760 PAB8; PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding
/ translation initiation factor; K13126 polyadenylate-binding
protein
Length=671
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 104/177 (58%), Gaps = 7/177 (3%)
Query 14 TLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKL 73
+LYVG++DA V + L+E FTQAG V V + +D T GY +V + + DA AL
Sbjct 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query 74 MGMVKLYGKPLRLSKAAHDR--RTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKV 131
+ + L G+ +R+ + D R VG N+F+ NLD +D K L +TFS+FG ++S KV
Sbjct 106 LNFMALNGRAIRVMYSVRDPSLRKSGVG-NIFIKNLDKSIDHKALHETFSAFGPILSCKV 164
Query 132 MRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVS---YAYKKDTRGER 185
DP +G SKG+ FV ++ EA+ A+ +NG L ++ V+V + ++D GE+
Sbjct 165 AVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEK 220
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 19/195 (9%)
Query 8 ERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDA 67
E+ + +YV N+ + ++ L ++F + GV I +D G +G+ FV FE+ DA
Sbjct 219 EKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDA 277
Query 68 DFALKLMGMVKLYGKPLRLSKAAHD-------RRTFDV----------GANLFVGNLDPD 110
A+ + K + KA ++ F+ G+NL+V NLD
Sbjct 278 ARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDES 337
Query 111 LDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRP 170
+ + L + F+ FG + S KVMRDP +GVS+G FV+ + E + A+ MNG+ + +P
Sbjct 338 VTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKP 396
Query 171 VHVSYAYKKDTRGER 185
++V+ A +K+ R R
Sbjct 397 LYVALAQRKEDRKAR 411
> mmu:381404 Pabpc1l, 1810053B01Rik, Epab; poly(A) binding protein,
cytoplasmic 1-like; K13126 polyadenylate-binding protein
Length=607
Score = 114 bits (284), Expect = 3e-25, Method: Composition-based stats.
Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
++LYVG++ V E +L+E+F+ G + + + +D T GYA++ F+ DA+ AL
Sbjct 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query 73 LMGMVKLYGKPLRLSKAAHDRRTFDVG-ANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKV 131
M + G+P+R+ + D G N+F+ NL+ +D K L+DTFS+FG+++S+KV
Sbjct 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query 132 MRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGERHGSAA 190
+ + E G S+GF FV E+ EA+ A+ MNG L +R V V + + R G+ A
Sbjct 131 VYN-EHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARA 187
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 61/185 (32%), Positives = 99/185 (53%), Gaps = 20/185 (10%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
+YV N+ A VDE L +LF+Q G ++ V + +D G +G+ FV FE +A A+ M
Sbjct 193 IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHM 251
Query 75 GMVKLYGKPL-----------------RLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLF 117
++ G+ L R + +R+ G NL+V NLD ++++ L
Sbjct 252 NGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLK 311
Query 118 DTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAY 177
+ FS++G + SAKVM E+ SKGF FV S E + A+ MNG+ + +P++V+ A
Sbjct 312 EVFSTYGVITSAKVM--TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query 178 KKDTR 182
+K+ R
Sbjct 370 RKEER 374
Score = 82.4 bits (202), Expect = 9e-16, Method: Composition-based stats.
Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 17/190 (8%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAH--QGYAFVEFESETDADFA 70
+++ N++ +D L++ F+ G + + V H +G+ FV FE+ A A
Sbjct 99 GNIFIKNLENSIDNKALYDTFSTFGSI----LSSKVVYNEHGSRGFGFVHFETHEAAQKA 154
Query 71 LKLMGMVKLYGKPLRLSK-AAHDRRTFDVGA------NLFVGNLDPDLDEKVLFDTFSSF 123
+ M + L + + + + +R ++GA N++V NL ++DE+ L D FS F
Sbjct 155 INTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQF 214
Query 124 GNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRG 183
GN+ S KVMRD G S+GF FV+ E E + A+ MNG+ + + ++V A K R
Sbjct 215 GNMQSVKVMRD-SNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQK---RA 270
Query 184 ERHGSAAERL 193
ER R
Sbjct 271 ERQSELKRRF 280
Score = 37.4 bits (85), Expect = 0.037, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query 9 RNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDAD 68
R Q LYV N+D ++++ L E+F+ GV+ + + + +G+ FV F S +A
Sbjct 290 RYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEAT 347
Query 69 FALKLMGMVKLYGKPLRLSKA 89
A+ M + KPL ++ A
Sbjct 348 KAVTEMNGRIVGTKPLYVALA 368
> mmu:668382 Pabpc1l2b-ps, EG668382, Pabpc1l2b, Rbm32b; poly(A)
binding protein, cytoplasmic 1-like 2B, pseudogene; K13126
polyadenylate-binding protein
Length=229
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 104/185 (56%), Gaps = 3/185 (1%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ +V E +L+E F+ AG + + I +DKVT GYA+V ++ DA AL+
Sbjct 31 ASLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALE 90
Query 73 LMGMVKLYGKPLRLSKAAHDRRTFDVG-ANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKV 131
M + G+P+R+ + D G N+F+ NL +D K L++ FS+FGN++S KV
Sbjct 91 TMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 150
Query 132 MRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGERHGSAAE 191
D E G KG+ FV + E+++ A+ A+NG FL R + V R G+ A
Sbjct 151 ACD-EKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERGAWAR 208
Query 192 RLLAA 196
+ +A
Sbjct 209 QSTSA 213
> cel:F18H3.3 pab-2; PolyA Binding protein family member (pab-2);
K13126 polyadenylate-binding protein
Length=566
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 96/162 (59%), Gaps = 2/162 (1%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LY+G++ V E +L+E F+ AG V + + +D + GYA+V F+ DA+ AL
Sbjct 57 ASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 116
Query 73 LMGMVKLYGKPLRLSKAAHDRRTFDVG-ANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKV 131
M ++G+P+R+ + D G N+F+ NLD +D K ++DTFS FGN++S KV
Sbjct 117 TMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKV 176
Query 132 MRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHV 173
D E G SKG+ FV E+ ++ A+ +NG L ++ V+V
Sbjct 177 ATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 21/203 (10%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKLM 74
++V N +D++ L +F++ G + + D G +G+ FV F + A A++ +
Sbjct 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAAGQAVEKL 298
Query 75 GMVKLYGKPLRLS---------KAAHDRRTFDV----------GANLFVGNLDPDLDEKV 115
L G +LS ++A +R ++ G NL+V N++ DL++
Sbjct 299 NDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDG 358
Query 116 LFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSY 175
L D FSSFG + SAKVM D E G SKGF FV E E + AA+ MN + + +P++V+
Sbjct 359 LRDHFSSFGTITSAKVMVD-ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVAL 417
Query 176 AYKKDTRGERHGSAAERLLAANR 198
A +K+ R + S + LA R
Sbjct 418 AQRKEDRRAQLASQYMQRLATLR 440
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 15/185 (8%)
Query 9 RNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDAD 68
R +++ N+D +D +++ F+ G + + D G +GY FV FE+E A
Sbjct 141 RAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDD-EGNSKGYGFVHFETEHSAQ 199
Query 69 FALKLMGMVKLYGKPLRLSK-AAHDRRTFDVG------ANLFVGNLDPDLDEKVLFDTFS 121
A++ + + L K + + K +R ++G N+FV N LD++ L FS
Sbjct 200 TAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFS 259
Query 122 SFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFL----CNRPVHVSYAY 177
FG + SA VM D + G KGF FV+ +A+ A+ +N L C + V A
Sbjct 260 KFGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCK--LSVCRAQ 316
Query 178 KKDTR 182
KK R
Sbjct 317 KKSER 321
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query 100 ANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALA 159
A+L++G+L PD+ E +LF+ FS G V+S +V RD + +S G+A+V+ + ++ AL
Sbjct 57 ASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 116
Query 160 AMNGQFLCNRPVHVSYAYKKDTRGERHGSA 189
MN + + RP+ + ++ ++D R G+
Sbjct 117 TMNFEVIHGRPMRIMWS-QRDPAARRAGNG 145
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query 8 ERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDA 67
+R Q LYV NI+ +++D L + F+ G + + D+ G +G+ FV FE +A
Sbjct 338 QRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDE-NGRSKGFGFVCFEKPEEA 396
Query 68 DFALKLMGMVKLYGKPLR--LSKAAHDRR 94
A+ M + KPL L++ DRR
Sbjct 397 TAAVTDMNSKMIGAKPLYVALAQRKEDRR 425
> pfa:PFL1170w polyadenylate-binding protein, putative; K13126
polyadenylate-binding protein
Length=875
Score = 112 bits (280), Expect = 9e-25, Method: Composition-based stats.
Identities = 67/172 (38%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG+++ V E +L+E+F G V + + +D VT GYA+V + + DA+ AL
Sbjct 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query 73 LMGMVKLYGKPLRLSKAAHDRRTFDVG-ANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKV 131
+ + G+P RL + D G N+FV NLD +D K LFDTFS FGN++S KV
Sbjct 76 TLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKV 135
Query 132 MRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRG 183
D E G SK + FV E E++ A+ +NG L ++ V+V KK R
Sbjct 136 ATD-EFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERA 186
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query 99 GANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAAL 158
G NL++ NLD +D+ +L + F FG + SAKVMRD E SKGF FV S E ++ A+
Sbjct 449 GVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFVCFASQEEANKAV 507
Query 159 AAMNGQFLCNRPVHVSYAYKKDTRGER 185
M+ + + +P++V A K++ R R
Sbjct 508 TEMHLKIINGKPLYVGLAEKREQRLSR 534
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query 9 RNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDAD 68
++Q LY+ N+D +D+ +L ELF G + + +D+ + +G+ FV F S+ +A+
Sbjct 446 KHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQS-KGFGFVCFASQEEAN 504
Query 69 FALKLMGMVKLYGKPLRLSKA 89
A+ M + + GKPL + A
Sbjct 505 KAVTEMHLKIINGKPLYVGLA 525
> hsa:340529 PABPC1L2A, MGC168104, PABPC1L2B, RBM32A; poly(A)
binding protein, cytoplasmic 1-like 2A; K13126 polyadenylate-binding
protein
Length=200
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 104/186 (55%), Gaps = 3/186 (1%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ +V E +L+E F+ AG + + I +DK+T GYA+V ++ DA AL+
Sbjct 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query 73 LMGMVKLYGKPLRLSKAAHDRRTFDVG-ANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKV 131
+ + G+P+R+ + D G N+F+ NL +D K L++ FS+FGN++S KV
Sbjct 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query 132 MRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGERHGSAAE 191
D E G KG+ FV + E+++ A+ MNG FL R + V R G+ A
Sbjct 122 ACD-EKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWAR 179
Query 192 RLLAAN 197
+ +A+
Sbjct 180 QSTSAD 185
> hsa:645974 PABPC1L2B, MGC168104, PABPC1L2A, RBM32B; poly(A)
binding protein, cytoplasmic 1-like 2B; K13126 polyadenylate-binding
protein
Length=200
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 104/186 (55%), Gaps = 3/186 (1%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVG++ +V E +L+E F+ AG + + I +DK+T GYA+V ++ DA AL+
Sbjct 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query 73 LMGMVKLYGKPLRLSKAAHDRRTFDVG-ANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKV 131
+ + G+P+R+ + D G N+F+ NL +D K L++ FS+FGN++S KV
Sbjct 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query 132 MRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGERHGSAAE 191
D E G KG+ FV + E+++ A+ MNG FL R + V R G+ A
Sbjct 122 ACD-EKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWAR 179
Query 192 RLLAAN 197
+ +A+
Sbjct 180 QSTSAD 185
> bbo:BBOV_IV008280 23.m06515; polyadenylate binding protein;
K13126 polyadenylate-binding protein
Length=585
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 102/186 (54%), Gaps = 2/186 (1%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
A+LYVGN+ +V E +L+E+F G V + + +D +T GYA+V + + DA+ AL+
Sbjct 36 ASLYVGNLLPEVTEAMLYEVFNGIGPVASIRVCRDSLTRKSLGYAYVNYYNFQDAEAALE 95
Query 73 LMGMVKLYGKPLRLSKAAHDRRTFDVG-ANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKV 131
+ +++ G+P R+ + D G N+FV NLD +D K L+DTFS FG ++S KV
Sbjct 96 CLNYIEIKGQPARIMWSERDPSLRKSGTGNIFVKNLDKAIDTKALYDTFSHFGTILSCKV 155
Query 132 MRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTRGERHGSAAE 191
D G SKG+ FV + E++ A+ +NG + N V V+ +++ R G
Sbjct 156 AID-SLGNSKGYGFVHYTTEESAKEAIEKVNGMLIGNSQVSVAPFLRRNERTSTVGDVFT 214
Query 192 RLLAAN 197
L N
Sbjct 215 NLYVRN 220
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 25/207 (12%)
Query 3 IAQVFERNQEAT--------LYVGNIDAQVDEDLLWELFTQAG-VVRLVNIPKDK----- 48
+A RN+ + LYV N ED L + F++ G + L+ DK
Sbjct 196 VAPFLRRNERTSTVGDVFTNLYVRNFPDTWTEDDLHQTFSKYGEITSLLLKSDDKGRRFA 255
Query 49 ---------VTGAHQGYAFVEFESETDADFALKLMGMVKLYGK-PLRLSKAAHDRRTFDV 98
A +G V+FES + + M + Y + A D+R +
Sbjct 256 FVNFVDTNMAKAAMEGENGVKFESVEEPMMVCQHMDKARRYAMLKAQYDSNAQDQRNKFM 315
Query 99 GANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAAL 158
G NL++ NLD D D+ L D F +G V S+KVMRD GVS+GF FV + + A+
Sbjct 316 GVNLYIKNLDDDFDDDGLRDLFKQYGTVTSSKVMRD-HNGVSRGFGFVCFSRPDEATKAV 374
Query 159 AAMNGQFLCNRPVHVSYAYKKDTRGER 185
A M+ + + N+P++V A K++ R R
Sbjct 375 AGMHLKLVKNKPLYVGLAEKREQRASR 401
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Query 15 LYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK-- 72
++V N+D +D L++ F+ G + + D + G +GY FV + +E A A++
Sbjct 126 IFVKNLDKAIDTKALYDTFSHFGTILSCKVAIDSL-GNSKGYGFVHYTTEESAKEAIEKV 184
Query 73 ---LMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSA 129
L+G ++ P L + DV NL+V N E L TFS +G + S
Sbjct 185 NGMLIGNSQVSVAPF-LRRNERTSTVGDVFTNLYVRNFPDTWTEDDLHQTFSKYGEITSL 243
Query 130 KVMRDPETGVSKGFAFVSMESFEASDAALAAMNG 163
+ D + + FAFV+ + AA+ NG
Sbjct 244 LLKSDDK---GRRFAFVNFVDTNMAKAAMEGENG 274
> sce:YER165W PAB1; Pab1p; K13126 polyadenylate-binding protein
Length=577
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
Query 10 NQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADF 69
N A+LYVG+++ V E L+++F+ G V + + +D +T GYA+V F
Sbjct 35 NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRK 94
Query 70 ALKLMGMVKLYGKPLRLSKAAHDRRTFDVGA-NLFVGNLDPDLDEKVLFDTFSSFGNVVS 128
A++ + + G+ R+ + D G+ N+F+ NL PD+D K L+DTFS FG+++S
Sbjct 95 AIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILS 154
Query 129 AKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVS 174
+K+ D E G SKGF FV E A+ A+ A+NG L + ++V+
Sbjct 155 SKIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA 199
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 22/203 (10%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
LYV NI+++ ++ ELF + G + ++ KD G +G+ FV +E DA A++
Sbjct 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVE 277
Query 73 LMGMVKLYGKPLRLSKAAHDRRTFDV-----------------GANLFVGNLDPDLDEKV 115
+ +L G+ L + +A V G NLFV NLD +D++
Sbjct 278 ALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEK 337
Query 116 LFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSY 175
L + F+ +G + SAKVMR E G SKGF FV + E + A+ N Q + +P++V+
Sbjct 338 LEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query 176 AYKKDTRGERHGSAAERLLAANR 198
A +KD R A+++ A N+
Sbjct 397 AQRKDV---RRSQLAQQIQARNQ 416
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 9/177 (5%)
Query 13 ATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALK 72
+++ N+ +D L++ F+ G + I D+ G +G+ FV FE E A A+
Sbjct 126 GNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAID 184
Query 73 LMGMVKLYGKPL----RLSKAAHDRRTFDVGA---NLFVGNLDPDLDEKVLFDTFSSFGN 125
+ + L G+ + LS+ D + + A NL+V N++ + ++ + F+ FG
Sbjct 185 ALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGP 244
Query 126 VVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTR 182
+VSA + +D + G KGF FV+ E E + A+ A+N L ++V A KK+ R
Sbjct 245 IVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER 300
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query 11 QEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFA 70
Q L+V N+D VD++ L E F G + + + + G +G+ FV F + +A A
Sbjct 320 QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKA 378
Query 71 LKLMGMVKLYGKPLRLSKA 89
+ + GKPL ++ A
Sbjct 379 ITEKNQQIVAGKPLYVAIA 397
> tgo:TGME49_024850 polyadenylate-binding protein, putative ;
K13126 polyadenylate-binding protein
Length=768
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query 14 TLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDADFALKL 73
+LYVG++ V E +L+E+F G V + + +D VT GYA+V ++ DA+ +L
Sbjct 84 SLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDT 143
Query 74 MGMVKLYGKPLRLSKAAHDRRTFDVG-ANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKVM 132
+ + G+P R+ D G N+FV NLD ++D K L+DTFS FGN++S KV
Sbjct 144 LNYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVA 203
Query 133 RDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTR 182
D + G SKG+ FV E+ E++ +A+ +NG + + V+V ++ R
Sbjct 204 VD-DNGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGPFIRRAER 252
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query 85 RLSKAAHDRRTFDVGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFA 144
+ + DR G NL++ N+D +D++ L F FG++ SAKVMRD E GVS+ F
Sbjct 373 KFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRD-ERGVSRCFG 431
Query 145 FVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTR 182
FV S E + A+ M+ + + +P++V A +++ R
Sbjct 432 FVCFMSPEEATKAVTEMHLKLVKGKPLYVGLAERREQR 469
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Query 7 FERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETD 66
++ ++V N+D +D L++ F+ G + + D G +GY FV +E+E
Sbjct 165 LRKSGNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVAVDD-NGHSKGYGFVHYENEES 223
Query 67 ADFALK-----LMGMVKLYGKPLRLSKAAHDRRTFDVGANLFVGNLDPDL-DEKVLFDTF 120
A A+ L+G +Y P + +A D N+++ N+ DE L +TF
Sbjct 224 ARSAIDKVNGMLIGGKTVYVGPF-IRRAERDNLAEAKYTNVYIKNMPSAWEDESRLRETF 282
Query 121 SSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQ 164
S FG++ S V +DP+ + FAF + +++ AA+ A+NG+
Sbjct 283 SKFGSITSLVVRKDPK---GRLFAFCNFADHDSAKAAVEALNGK 323
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 0/81 (0%)
Query 98 VGANLFVGNLDPDLDEKVLFDTFSSFGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAA 157
V +L+VG+L D+ E +LF+ F+S G V S +V RD T S G+A+V+ + + ++ +
Sbjct 81 VSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERS 140
Query 158 LAAMNGQFLCNRPVHVSYAYK 178
L +N + +P + + ++
Sbjct 141 LDTLNYTVIKGQPCRIMWCHR 161
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query 8 ERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFESETDA 67
+R Q LY+ N+D +D++ L +LF G + + +D+ G + + FV F S +A
Sbjct 383 DRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDE-RGVSRCFGFVCFMSPEEA 441
Query 68 DFALKLMGMVKLYGKPL 84
A+ M + + GKPL
Sbjct 442 TKAVTEMHLKLVKGKPL 458
> tpv:TP01_0945 polyadenylate binding protein; K13126 polyadenylate-binding
protein
Length=661
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 100/180 (55%), Gaps = 5/180 (2%)
Query 4 AQVFERNQEATLYVGNIDAQVDEDLLWELFTQAGVVRLVNIPKDKVTGAHQGYAFVEFES 63
QVF A+LYVG++ V E +L+E+F G V + + +D VT GYA+V + S
Sbjct 21 TQVF---SSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYS 77
Query 64 ETDADFALKLMGMVKLYGKPLRLSKAAHDRRTFDVGA-NLFVGNLDPDLDEKVLFDTFSS 122
DA AL+ + +++ G P R+ + D GA N+FV NLD +D K L+DTFS
Sbjct 78 TQDAQEALENLNYIEIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSH 137
Query 123 FGNVVSAKVMRDPETGVSKGFAFVSMESFEASDAALAAMNGQFLCNRPVHVSYAYKKDTR 182
FG ++S KV D +G SK + FV E+ E++ A+ +NG + + V V+ +K R
Sbjct 138 FGPILSCKVAVD-ASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAPFLRKQDR 196
Lambda K H
0.319 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 5866798756
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
Posted date: Sep 16, 2011 8:45 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40