bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eace_3268_orf1
Length=72
Score E
Sequences producing significant alignments: (Bits) Value
SPAC56F8.07 55.1 3e-08
YER143w 50.8 6e-07
7293232 42.7 2e-04
CE23513 34.3 0.063
Hs22056190 28.9 2.7
At1g22430 26.9 8.8
> SPAC56F8.07
Length=507
Score = 55.1 bits (131), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 0/44 (0%)
Query 3 ADKCSLASIIDKRFAGLTMGVGKAPIMGRVHVAPLKLGTKFCPC 46
A+KC L ++D RF G+ GVG A I+G VH APLK+G + PC
Sbjct 315 AEKCGLTRLLDTRFQGVAKGVGMAKILGCVHSAPLKIGDLYLPC 358
> YER143w
Length=428
Score = 50.8 bits (120), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 0/46 (0%)
Query 2 FADKCSLASIIDKRFAGLTMGVGKAPIMGRVHVAPLKLGTKFCPCS 47
A K L+ +IDKRF G GVG I+GR+H A +K+ T++ PCS
Sbjct 232 LAKKTGLSRMIDKRFIGEARGVGTGKIIGRIHQAQVKIETQYIPCS 277
> 7293232
Length=458
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query 3 ADKCSLASIIDKRFAGLTMGVGKAPIMGRVHVAPLKLGTKFCPCSSYCFGGHQDAD 58
A++C + +ID R+ G+ GVG PI+GR+H+ L++ SS+ G Q D
Sbjct 270 AERCHVNRLIDTRWNGVAKGVGTQPILGRIHMVQLQIENDHL-TSSFTVLGQQPMD 324
> CE23513
Length=389
Score = 34.3 bits (77), Expect = 0.063, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query 1 AFADKCSLASIIDKRFAGLTMGV-GKAPIMGRVHVAPLKLGTKFCPC 46
A A++C L +ID+RF + GV G I G++H+ +K+ C
Sbjct 272 ACAERCGLNGLIDRRFQSMARGVGGTEKIEGKIHLCDVKVEDAHFSC 318
> Hs22056190
Length=1691
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 0/17 (0%)
Query 43 FCPCSSYCFGGHQDADA 59
F PC++ C GGHQ+A A
Sbjct 653 FTPCTATCVGGHQEAIA 669
> At1g22430
Length=388
Score = 26.9 bits (58), Expect = 8.8, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query 8 LASIIDKRFAGLTMGVGKAPIMG-RVHVAPLKLGT 41
LAS++++ F G GK ++G H AP+ LG+
Sbjct 283 LASLLNEAFISTRTGTGKTVMLGMEKHAAPISLGS 317
Lambda K H
0.324 0.138 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1190896168
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40