bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eace_3015_orf2
Length=77
Score E
Sequences producing significant alignments: (Bits) Value
At5g42740 42.0 3e-04
YBR196c 33.5 0.087
SPBC1604.05 29.6 1.4
Hs20560659 28.1 4.2
7303982 27.7 5.5
YOR177c 26.9 9.3
> At5g42740
Length=560
Score = 42.0 bits (97), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 0/47 (0%)
Query 30 LRELMQDEERNARMYREFGGVCMDFSRQLLDKEGLDALIELAKERRV 76
LR+LM D R M EF G+ +D+SRQ E +D L+ LAK ++
Sbjct 29 LRDLMSDANRCQSMMMEFDGLLLDYSRQRATVETMDKLLNLAKASQL 75
> YBR196c
Length=554
Score = 33.5 bits (75), Expect = 0.087, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query 6 KMSSEFLSTKSVGLLQQQKGLNNSLR-ELMQDEERNARMYREF-----GGVCMDFSRQLL 59
K+++E + + + + +G S++ E +D +R ++ + F + D+S+ L+
Sbjct 10 KLATELPAWSKLQKIYESQGKTLSVKQEFQKDAKRFEKLNKTFTNYDGSKILFDYSKNLV 69
Query 60 DKEGLDALIELAKERRV 76
+ E + ALIELAKE V
Sbjct 70 NDEIIAALIELAKEANV 86
> SPBC1604.05
Length=550
Score = 29.6 bits (65), Expect = 1.4, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 0/34 (0%)
Query 43 MYREFGGVCMDFSRQLLDKEGLDALIELAKERRV 76
+ E G + DFS+ L+ +E ++ L++LAKE V
Sbjct 49 LKEEDGPILFDFSKNLITEETVELLVKLAKEANV 82
> Hs20560659
Length=987
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 0/28 (0%)
Query 23 QKGLNNSLRELMQDEERNARMYREFGGV 50
Q+ L R+L+++EE+NAR+ +E G V
Sbjct 662 QQELRTVKRKLLEEEEKNARLQKELGDV 689
> 7303982
Length=558
Score = 27.7 bits (60), Expect = 5.5, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query 24 KGLNNSLREL-MQDEER----NARMYREFGG-VCMDFSRQLLDKEGLDALIELAKERRV 76
KG + ++++L ++D +R + R++ + G + +D+S+ ++ E D L+ LAK RRV
Sbjct 24 KGKDLNIKDLFVKDSKRFSKYSLRLHTQNDGEILLDYSKNRINDEVWDLLLTLAKVRRV 82
> YOR177c
Length=464
Score = 26.9 bits (58), Expect = 9.3, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query 16 SVGLLQQQ----KGLNNSLR-ELMQDEERNARMYREFGGVCMDFSRQLLDKE 62
S+ LQQQ K NN LR + + +ER R+ EF + D+S+Q+ KE
Sbjct 231 SINSLQQQLLEEKTANNILRRDYYKLQERGRRLCHEFQELQDDYSKQMKQKE 282
Lambda K H
0.317 0.134 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1175087368
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40