bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eace_1791_orf1
Length=158
Score E
Sequences producing significant alignments: (Bits) Value
CE01070 48.1 7e-06
Hs7656959 41.2 8e-04
At1g55350 32.3 0.41
> CE01070
Length=805
Score = 48.1 bits (113), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 16/73 (21%)
Query 86 LSLSEKQQQKFYAWRRISDALQQQQQQQQQEQQQEPVQPEVLFDLPCSRSIRQGFVGDCS 145
+SL++KQ+ K W+R+S+ + P ++F + C +I+Q + DCS
Sbjct 253 ISLTQKQRMKLKCWKRVSELFEN---------------PTIIFSIDC-HTIKQTVISDCS 296
Query 146 FLASLAVLADYER 158
F++SL++ A YE+
Sbjct 297 FISSLSIAALYEK 309
> Hs7656959
Length=813
Score = 41.2 bits (95), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query 86 LSLSEKQQQKFYAWRRISDALQQQQQQQQQEQQQEPVQPEVLFDLPCSRSIRQGFVGDCS 145
L LS KQ+ F W R D P +++ + S SI+Q V DCS
Sbjct 248 LPLSPKQKTTFSKWVRPEDLTNN---------------PTMIYTVS-SFSIKQTIVSDCS 291
Query 146 FLASLAVLADYER 158
F+ASLA+ A YER
Sbjct 292 FVASLAISAAYER 304
> At1g55350
Length=2143
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query 3 ITGGETEETLIKQRQ---NPTWDFVWFQLQRGLSEGRCVACLGTSEVFDAAPSGLDFPEG 59
+TGG EE ++ Q + +W QL R EG + +PSG D
Sbjct 1888 LTGGAGEEIDLRSAQAQIDLASGRLWSQLLRFKQEGFLLGA--------GSPSGSDVHVS 1939
Query 60 VSVSTGIVARHAYSVLRHAEVLGFRFLSL 88
S+GIV HAYSVL+ EV G R + +
Sbjct 1940 ---SSGIVQGHAYSVLQVREVDGHRLVQI 1965
Lambda K H
0.321 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2100092188
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40