bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eace_1514_orf1
Length=152
Score E
Sequences producing significant alignments: (Bits) Value
SPCC1442.14c 38.9 0.004
7295909 33.5 0.16
Hs4503719 31.6 0.56
YDL125c 31.2 0.80
7297165 27.7 9.8
> SPCC1442.14c
Length=133
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query 5 VAILDAFPTAPGHSLLISKAPVETVMELSEQQAADVLKELPRLCRAV----QQVCIHTQR 60
+A LD PT+ GH+L+I K + ELS++ AD+L + ++ +A+ V + R
Sbjct 25 LAFLDIAPTSKGHALVIPKEHAAKMHELSDESCADILPLVKKVTKAIGPENYNVLQNNGR 84
Query 61 QQYAFVSTAHPH 72
+ FV H H
Sbjct 85 IAHQFVDHVHFH 96
> 7295909
Length=126
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query 2 EHCVAILDAFPTAPGHSLLISKAPVETVMELSEQQAADVLKELPRLCRAVQQ 53
+ CVA D P AP H L+I + P+ + L+E AD+L L + R V +
Sbjct 36 DKCVAFHDVAPQAPTHFLVIPRKPIAQ-LSLAEDGDADLLGHLMLVGRKVAK 86
> Hs4503719
Length=147
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 0/53 (0%)
Query 1 TEHCVAILDAFPTAPGHSLLISKAPVETVMELSEQQAADVLKELPRLCRAVQQ 53
TE A+++ P PGH L+ PVE +L + AD+ + R+ V++
Sbjct 19 TELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEK 71
> YDL125c
Length=158
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 0/52 (0%)
Query 1 TEHCVAILDAFPTAPGHSLLISKAPVETVMELSEQQAADVLKELPRLCRAVQ 52
T++ A LD PTA GH+L+I K + ++ ++ D + RL +A++
Sbjct 43 TKYSYAFLDIQPTAEGHALIIPKYHGAKLHDIPDEFLTDAMPIAKRLAKAMK 94
> 7297165
Length=992
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 0/25 (0%)
Query 94 SGNKLRRRERPPQRRRGCGPNCSSS 118
SG +++ PP+R+R CGP SS+
Sbjct 799 SGEQVQSTALPPKRQRSCGPRLSST 823
Lambda K H
0.327 0.135 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1925034518
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40