bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eace_1009_orf2 Length=134 Score E Sequences producing significant alignments: (Bits) Value CE27006_1 39.7 0.002 At1g67820 30.8 0.84 7297303 30.0 1.1 YBL056w 29.3 2.0 Hs22043217 29.3 2.3 At1g07160 28.9 2.9 At2g40180 28.1 5.4 Hs18375634 26.9 9.9 > CE27006_1 Length=772 Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query 76 EPMA--PTNYG-TFQVSVDTDIGGRKHQEDRFTVCPALIA-GRDDAAFFGVFDGTVGDFA 131 EPMA P +G +++V GGR++ EDR + I G D F GVFDG G+ A Sbjct 6 EPMARTPIQFGENMRITVAASQGGRRYMEDRCVIHTERINNGLLDWTFVGVFDGHGGEHA 65 Query 132 SE 133 SE Sbjct 66 SE 67 > At1g67820 Length=464 Score = 30.8 bits (68), Expect = 0.84, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Query 95 GGRKHQEDRFTVCPALIAGRDDAAFFGVFDGTVGDFASE 133 G +K ED + P L+ G +FFGV+DG G A+E Sbjct 128 GKKKFMEDTHRIVPCLV-GNSKKSFFGVYDGHGGAKAAE 165 > 7297303 Length=524 Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query 87 QVSVDTDIGGRKHQEDRFTVCPALIAGRDDAAFFGVFDGTVGDFASE 133 Q S +G R EDRF + I +FF VFDG G+FA++ Sbjct 110 QSSAFAVLGRRPRMEDRFII-EENINNNTGISFFAVFDGHGGEFAAD 155 > YBL056w Length=468 Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Query 95 GGRKHQEDRFTVCPALIAGRDDA--AFFGVFDGTVGDFASE 133 G R ED V P L+A D+ AF+G+FDG G +E Sbjct 31 GWRMSMEDAHIVEPNLLAESDEEHLAFYGIFDGHGGSSVAE 71 > Hs22043217 Length=208 Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query 87 QVSVDTDIGGRKHQEDRFTVCPALIAGRDDAAFFGVFD 124 V+V + G R H EDRF V L A + + FG+FD Sbjct 77 NVAVYSIQGRRDHMEDRFEVLTDL-ANKTHPSIFGIFD 113 > At1g07160 Length=380 Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query 89 SVDTDIGGRKHQEDRFTVCPALIAGRDDAAFFGVFDGTVGDFASE 133 SV G R+ EDRF+ L G A FGV+DG G A+E Sbjct 124 SVYCKRGKREAMEDRFSAITNL-QGDPKQAIFGVYDGHGGPTAAE 167 > At2g40180 Length=390 Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 7/49 (14%) Query 89 SVDTDIGGRKHQEDRFTVCPALIAGRDDA----AFFGVFDGTVGDFASE 133 SV G R EDR+ A + DD AFFGVFDG G A+E Sbjct 130 SVYCKRGRRGPMEDRYF---AAVDRNDDGGYKNAFFGVFDGHGGSKAAE 175 > Hs18375634 Length=1132 Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 5/102 (4%) Query 9 PAWSPAVQQLHQQQLALTPSSSTSSSSSSSDSSSRRRCSLYTA--MAHSPAAGDAAAAAA 66 P W P +QQ Q Q + P S + S + RR+ + S A AA AA Sbjct 1016 PEWVPIIQQDIQSQRKVKPQPPLSDAYLSGMPAKRRKTMQGEGPQLLLSEAVSRAAKAAG 1075 Query 67 AAEL--PRTLHEPM-APTNYGTFQVSVDTDIGGRKHQEDRFT 105 A L P +L + AP +++ + +DI R ++ ++ Sbjct 1076 ARPLTSPESLSRDLEAPEVQESYRQQLRSDIQKRLQEDPNYS 1117 Lambda K H 0.314 0.124 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1393086308 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40