bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eace_0334_orf1
Length=138
Score E
Sequences producing significant alignments: (Bits) Value
Hs20149304 60.5 1e-09
At3g18790 58.9 3e-09
7298990 58.9 3e-09
CE05922 57.4 8e-09
SPBC32F12.05c 41.6 5e-04
> Hs20149304
Length=285
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query 8 YYYFGAAKELPGVRELFAGRAEEINEPRKTRAQLFQRITPDYFGWRDEENEDLLLAEQQQ 67
Y YFGAAK+LPGVRELF E + PRKTRA+L + I +Y+G+ DE++ ++ EQ+
Sbjct 120 YKYFGAAKDLPGVRELF--EKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEY 177
Query 68 EQ 69
E+
Sbjct 178 EK 179
> At3g18790
Length=300
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
Query 5 GGDYYYFGAAKELPGVRELFAGRAEEINEPRKTRAQLFQRITPDYFGWRDEENEDLLLAE 64
G Y YFGAAK+LPGVRELF + E+ + RKTR +++RI Y+G+RD+E+ L E
Sbjct 124 GPGYRYFGAAKKLPGVRELFE-KPPELRK-RKTRYDIYKRIDASYYGYRDDEDGILEKLE 181
Query 65 QQQEQLWQQQQEEELQQQQELLESVGAASAAAAAKGMAAAAER 107
++ E +++ EE ++ E+ + ++ + G AAAA R
Sbjct 182 RKSEGGMRKRSVEEWRRLDEVRKEARKGASEVVSVGAAAAAAR 224
> 7298990
Length=274
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query 8 YYYFGAAKELPGVRELFAGRAEEINEPRKTRAQLFQRITPDYFGWRDEENEDLLLAEQQQ 67
Y YFGAAK+LPGVRELF + PRK+RA+L + I +Y+G+RD+E+ L+ E++
Sbjct 122 YKYFGAAKDLPGVRELFE--QDPPPPPRKSRAELMKDIDAEYYGYRDDEDGVLIPLEERI 179
Query 68 EQ 69
E+
Sbjct 180 ER 181
> CE05922
Length=267
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 6/81 (7%)
Query 8 YYYFGAAKELPGVRELFAGRAEEINEPRKTRAQLFQRITPDYFGWRDEENEDL-----LL 62
Y YFGAAK+LPGVRELF ++ E E R+ RA L + I YFG+ D+E+ L L+
Sbjct 121 YKYFGAAKDLPGVRELFE-KSTEGEEQRRHRADLLRNIDAHYFGYLDDEDGRLIPLEKLI 179
Query 63 AEQQQEQLWQQQQEEELQQQQ 83
E+ E++ ++ E++ Q+QQ
Sbjct 180 EEKNIERINKEFAEKQAQKQQ 200
> SPBC32F12.05c
Length=217
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query 7 DYYYFGAAKELPGVRELFAGRAEEINEPRKTRAQLFQRITPD--YFGWRDEENEDLL--- 61
DY Y+G A+ELPGV+ELF I P + R Q Q+ D YFG+ E LL
Sbjct 106 DYRYYGRARELPGVKELFEADMSFI--PERQRKQEMQKRRLDAWYFGYIPPAQESLLEDF 163
Query 62 ---LAEQQQEQL 70
+ EQQ + L
Sbjct 164 EAKIEEQQHKHL 175
Lambda K H
0.310 0.126 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1498437086
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40