bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eace_0131_orf4 Length=54 Score E Sequences producing significant alignments: (Bits) Value Hs6912654 79.3 2e-15 At5g64270 78.2 4e-15 7296186 77.4 5e-15 YMR288w 65.1 3e-11 SPAC27F1.09c 58.9 2e-09 CE03641 57.0 9e-09 > Hs6912654 Length=1304 Score = 79.3 bits (194), Expect = 2e-15, Method: Composition-based stats. Identities = 29/52 (55%), Positives = 45/52 (86%), Gaps = 0/52 (0%) Query 3 GLFHPARKVREVYWRVYNTVYIGHQDAMVAFYPKLPDDGKHSFARHELELFI 54 GLFHPARKVR+VYW++YN++YIG QDA++A YP++ +D K+++ R+EL+ + Sbjct 1253 GLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1304 > At5g64270 Length=1269 Score = 78.2 bits (191), Expect = 4e-15, Method: Composition-based stats. Identities = 31/52 (59%), Positives = 42/52 (80%), Gaps = 0/52 (0%) Query 3 GLFHPARKVREVYWRVYNTVYIGHQDAMVAFYPKLPDDGKHSFARHELELFI 54 GLFHPARKVREVYW++YN++YIG QD +VA YP L D+ + ++R EL +F+ Sbjct 1218 GLFHPARKVREVYWKIYNSLYIGAQDTLVAAYPVLEDEQNNVYSRPELTMFV 1269 > 7296186 Length=1349 Score = 77.4 bits (189), Expect = 5e-15, Method: Composition-based stats. Identities = 29/49 (59%), Positives = 43/49 (87%), Gaps = 0/49 (0%) Query 3 GLFHPARKVREVYWRVYNTVYIGHQDAMVAFYPKLPDDGKHSFARHELE 51 GLFHPARKVR+VYW++YN++YIG QDA++A YP++ +D K+ + R+EL+ Sbjct 1298 GLFHPARKVRDVYWKIYNSLYIGGQDALIAGYPRITNDPKNQYERYELD 1346 > YMR288w Length=971 Score = 65.1 bits (157), Expect = 3e-11, Method: Composition-based stats. Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 0/50 (0%) Query 3 GLFHPARKVREVYWRVYNTVYIGHQDAMVAFYPKLPDDGKHSFARHELEL 52 GLFHPA+ VR+ +WRVYN +Y+ +QDAMV FYP PD+ + +L L Sbjct 922 GLFHPAKNVRKAFWRVYNNMYVMYQDAMVPFYPVTPDNNEEYIEELDLVL 971 > SPAC27F1.09c Length=1188 Score = 58.9 bits (141), Expect = 2e-09, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 0/54 (0%) Query 1 ILGLFHPARKVREVYWRVYNTVYIGHQDAMVAFYPKLPDDGKHSFARHELELFI 54 + GLFHP+RKVR YW YN+ Y+ DAMV +YP + DD +++ L + I Sbjct 1135 VQGLFHPSRKVRNTYWTSYNSAYVQSADAMVPYYPHVDDDQFNNYDMKTLHICI 1188 > CE03641 Length=1322 Score = 57.0 bits (136), Expect = 9e-09, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 0/49 (0%) Query 3 GLFHPARKVREVYWRVYNTVYIGHQDAMVAFYPKLPDDGKHSFARHELE 51 L+HPARKVRE W+V+N + +G DA++A YP++ + + + R+EL+ Sbjct 1271 ALWHPARKVREPVWKVFNNLILGSADALIAAYPRIENTPTNQYVRYELD 1319 Lambda K H 0.329 0.146 0.476 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1200194442 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40