bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_3256_orf1 Length=131 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd5_3300 61.2 9e-09 > 5807.cgd5_3300 Length=2084 Score = 61.2 bits (147), Expect = 9e-09, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 46/95 (48%), Gaps = 13/95 (13%) Query 24 LVRCVGCGVYVHLECYGGFSLGDGTGGDDPRRLLCDPCLWGLNPKEVRCVLCPRRGGALK 83 LV C CG+ VH CYG LG+ + +C C+ G+ P+ C+LCPRRGGAL Sbjct 1345 LVSCKCCGLTVHWSCYG---LGEKM--ESINDFVCQACIKGVRPENTSCILCPRRGGALI 1399 Query 84 TVQ--PFAAGAALGWRSGGCFTPSFVHSFCVLLSP 116 Q P G R+ FVH C L +P Sbjct 1400 EAQGIPQNHIGRPGERT------QFVHIICSLYTP 1428 Lambda K H 0.325 0.144 0.495 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22935578866 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40