bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_3196_orf1 Length=166 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd2_4350 67.8 1e-10 > 5807.cgd2_4350 Length=1281 Score = 67.8 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 0/80 (0%) Query 87 LYDEPRGSVGRRWRTFFLCYYGPFLMKRPVKIAVLTIFITIAAVSIYGFSKLELGLEISE 146 L EP G+VGR R L Y GP + VKI V+ I++ VSIYGF+K+E GL++ + Sbjct 813 LLAEPSGNVGRTTRRLMLHYIGPVMATPIVKIIVIIIWLGFLGVSIYGFTKMESGLDLRD 872 Query 147 LAPVTSYMRRFDEIYAEYFN 166 L+P +SY++ FD+ + +YFN Sbjct 873 LSPPSSYLQAFDQDFTKYFN 892 Lambda K H 0.324 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 29876498544 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40