bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_3068_orf2 Length=140 Score E Sequences producing significant alignments: (Bits) Value 5833.PFI0735c 72.0 4e-12 > 5833.PFI0735c Length=533 Score = 72.0 bits (175), Expect = 4e-12, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 62/112 (55%), Gaps = 18/112 (16%) Query 18 SNLQNKKRL----RVVVVGGGWSSSSFVSSLDPRQFEVVWISPEEHLSYTPLLPCVCGGA 73 +NL+N K + +++++G GW +F+ ++D ++++V ISP + ++TPLLPC+C G Sbjct 29 NNLKNNKDIERKEKIIILGSGWGGFNFLLNIDFKKYDVTLISPRNYFTFTPLLPCLCSGT 88 Query 74 LPAAACTTSLRGLLSFGGKAEGR-GRYYQ----------AVVDNVDLNNNRV 114 L CT S+R L K G G Y Q ++ +D+ NN+V Sbjct 89 LSVNVCTESIRNFLR---KKNGYCGNYLQLECTDVFYEDKYINCIDIENNKV 137 Lambda K H 0.320 0.134 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22914837435 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40