bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_3018_orf1 Length=170 Score E Sequences producing significant alignments: (Bits) Value 5833.PFL1110c 67.8 1e-10 > 5833.PFL1110c Length=441 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query 87 LPMPSAKAQAKNRQSVSAEVYGEWNKK-KPFVAPVHEKTPEEKKRIRDILENSFLFSSLE 145 L + S K R SVSAE YG+WNKK F+ V++K +EK +IR+ L SFLF+ L Sbjct 135 LDLESIHFIQKKRLSVSAEAYGDWNKKIDNFIPKVYKKDEKEKAKIREALNESFLFNHLN 194 Query 146 AEDIEVVLGAFEGLSVAKGTVIIKQ 170 ++ E+++ AF +V KG II + Sbjct 195 KKEFEIIVNAFFDKNVEKGVNIINE 219 Lambda K H 0.318 0.137 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 31617132627 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40