bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_2949_orf1 Length=140 Score E Sequences producing significant alignments: (Bits) Value 5833.PFL0565w 102 3e-21 > 5833.PFL0565w Length=244 Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/117 (47%), Positives = 74/117 (63%), Gaps = 18/117 (15%) Query 1 IRRAYRRLAIQWHPDKNRDRQQEATEKFKAISEAYEVLSNEEKRRLYDVSCSQPSGGPGL 60 I+++YR LA++WHPDKN + + EATE+FK ISEAYEVLS+ ++RR YD+ + + Sbjct 22 IKKSYRTLAMKWHPDKNPNNKAEATERFKQISEAYEVLSDPKRRRKYDLYGTDEN----- 76 Query 61 RRSSSAAAAAAAAAAAAAEFARFHEAFQFSDAQRIFEMAFG-GSPFGR-SFFNDADG 115 A EF+ FH+ F F+DAQRIFEM FG SPFG SFF+D G Sbjct 77 -----------YMADENDEFSNFHKNFGFNDAQRIFEMFFGDSSPFGNDSFFSDVMG 122 Lambda K H 0.318 0.129 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22914837435 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40