bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_2938_orf2 Length=154 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd6_4370 74.7 7e-13 > 5807.cgd6_4370 Length=556 Score = 74.7 bits (182), Expect = 7e-13, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 1/139 (0%) Query 14 TTLYIGNITKHADNDFMRNLLGEFGRVLRWNRQSDPISGQLAAFGFCDFAEPLAAAKCVA 73 TT+Y+G I N +R LL E G +LRW+RQ DP + +L++FG C+F P V+ Sbjct 63 TTVYVGKIPAQVTNTHIRKLLSECGTILRWSRQEDPTTKKLSSFGLCEFDSPEGVINAVS 122 Query 74 CLAGRKLHGRSLVVNCNEKVRAKIAKVTEERILATMRAYKNK-TREQVEKEIEEEYKRLK 132 L G K+ G L+V + +IAK RI ++ T E + E+ +L+ Sbjct 123 ALNGIKISGGQLLVKYQHGIDKEIAKWQSNRINELLKHRGGDCTIETILNELSTSDSKLR 182 Query 133 DGVQQILDKKNASLPEDDE 151 +Q++L L + E Sbjct 183 ISIQRLLAGMTFELDSEQE 201 Lambda K H 0.316 0.131 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23121682173 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40