bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_2778_orf1 Length=77 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd8_2520 96.3 3e-19 > 5807.cgd8_2520 Length=1280 Score = 96.3 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 41/70 (58%), Positives = 57/70 (81%), Gaps = 0/70 (0%) Query 8 WAQGQSFAALIRSTSLYEGTVIRCMRRLEELLRQLASAAKAIGNQELEAKCVAAVRQLRR 67 W++G+SFA+++ +TS YEG+VIRC+RRLEELLRQ+ASA K+IGN +LE K + +RR Sbjct 1211 WSKGESFASILENTSFYEGSVIRCLRRLEELLRQVASATKSIGNDDLEKKLKEGIALIRR 1270 Query 68 GSIFSSSLYL 77 G +F+ SLYL Sbjct 1271 GIVFTPSLYL 1280 Lambda K H 0.323 0.132 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23091434817 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40