bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_2462_orf2 Length=88 Score E Sequences producing significant alignments: (Bits) Value 37347.ENSTBEP00000004890 60.1 2e-08 > 37347.ENSTBEP00000004890 Length=458 Score = 60.1 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 4/73 (5%) Query 8 GGVVLDRAAVKLLVECIDSGRCRCTADGSADDMILGLWAQQLQLPLLHARGWHQERPADY 67 GG+V R A++ L+ S +CRC ++ + DDM+LG+ L +P++H+ +HQ RP DY Sbjct 354 GGMVFSREAIRRLL----SSKCRCYSNDAPDDMVLGMCFSGLGIPVIHSPLFHQARPVDY 409 Query 68 HHLVVHAITPVSF 80 + P+SF Sbjct 410 PKDYLSHQVPISF 422 Lambda K H 0.328 0.140 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23142708390 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40