bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_2445_orf1 Length=110 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd8_3210 83.2 2e-15 > 5807.cgd8_3210 Length=917 Score = 83.2 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 46/109 (42%), Positives = 59/109 (54%), Gaps = 4/109 (3%) Query 3 QQPPLLDFTDLTVKALKLLEPPAT-RAELGAQWPYLVVDEFQDTNSNQFKFICLLALQRP 61 +P L+D+TDL AL LLE R ++ +PY+ DEFQDT+ QFK + LL Sbjct 296 HKPYLVDYTDLITLALNLLENNINIREKIQDSYPYIFCDEFQDTSKLQFKILELLT---K 352 Query 62 PNIQTLHTAVGNPTLPNSTPGRGGVTVVGDDDQSIYKWRGTHTGIFHEF 110 I + RGG+TVVGDDDQ+IY WRG TG+F F Sbjct 353 SIINKKRKFEAEKFTRDQNLRRGGITVVGDDDQAIYSWRGVETGVFSRF 401 Lambda K H 0.319 0.138 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23096258976 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40