bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_2344_orf1 Length=109 Score E Sequences producing significant alignments: (Bits) Value 5833.PFD0180c 108 5e-23 > 5833.PFD0180c Length=780 Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 50/109 (45%), Positives = 74/109 (67%), Gaps = 0/109 (0%) Query 1 RELERARKVFERYLSNRPSQEAFLRFCKFEERHKNIPRARAGFEKAIELLPEDMLDENFY 60 E+ + R++FER + + P E F +F KFE+++KNI RARA +EK IELLP +DENFY Sbjct 186 NEINKCREIFERLIVSIPKLECFYKFIKFEKKYKNIVRARAAYEKCIELLPSCYIDENFY 245 Query 61 LKFAAFEERQREQARAKAIYEAALQRVPRGQADELYSKYVAFQKQFGDK 109 + F FEE Q E R K IY AL+ +P+ +++ LY ++ FQK++ +K Sbjct 246 IHFCNFEEEQNEYERCKKIYIEALKILPKNKSELLYKNFLQFQKKYANK 294 Lambda K H 0.322 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22374500883 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40