bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_2292_orf1 Length=144 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0681 68.6 6e-11 > 5833.PF14_0681 Length=488 Score = 68.6 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query 18 AAAIIPSGTGNDLAHTYGWNTAPFPTHDPLRKDNLERILKLLEHSDLVFHDYWRVTVVTK 77 A +IP GTGND A +GW + D L++I+ S + HDYW + VV K Sbjct 166 AIGVIPFGTGNDFAKAFGWKKIDRMLNHSFLFDVLKKIVDQTFKSKVEKHDYWNIHVVLK 225 Query 78 EEEGGFSAWCNTAKSVVRLGEDRNGGVRIKSFIMSNYFSIGFEGAVGTQFDKYRGSS 134 E+G F+ + K L D + MSNYFSIG + +G F+++R S Sbjct 226 -EQGYFNKINSRTKKKETLLNDDKENLHEMKLCMSNYFSIGIDSRIGRGFERHRQKS 281 Lambda K H 0.319 0.135 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22567178795 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40