bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_2270_orf1 Length=144 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd1_350 82.0 4e-15 > 5807.cgd1_350 Length=569 Score = 82.0 bits (201), Expect = 4e-15, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 14/150 (9%) Query 4 RVTGEAYVNVHSTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMSSGTKD 63 ++TGEAYV + S ++++ LHG+ MG RWIEV SS ++F +Q ++S K Sbjct 356 KMTGEAYVLLPSIKAYELSLTLLHGKRMGKRWIEVLPSSTKEFLICLQ-----ITSLKKQ 410 Query 64 GRDADV--------KGLNLTVLKLRGLPWTCTDNDVVNFFQEHG-FDIGLDSVVLGVAVD 114 ++ + + N +VL+LRGLPW+ T+ ++V FF G + + V LG+ + Sbjct 411 NQNPSIFNDNKIIDRYYNRSVLRLRGLPWSTTEIEIVQFFISGGIYGLNASDVFLGITEN 470 Query 115 GRMNGIAYVELTDAATADAAKEKLHRKYLG 144 R +G A++ L A A+ L+R+ +G Sbjct 471 QRASGEAWIILPHKCDAFDAQRILNRRVIG 500 Lambda K H 0.320 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22567178795 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40