bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_2056_orf1 Length=133 Score E Sequences producing significant alignments: (Bits) Value 3702.AT2G21600.1 77.8 8e-14 > 3702.AT2G21600.1 Length=195 Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 3/77 (3%) Query 59 RVSSVYLNKSILYLKTRWLVLFACLAFYIVRVYFLAGFFVVSYGLGIYLLNLLIGFISPQ 118 RV YL+K+ + RW+ Y +RVY + GF+++SYGLGIYLLNLLIGF+SP Sbjct 24 RVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPL 83 Query 119 VDPE---TDEYVLPVRG 132 VDPE +D LP RG Sbjct 84 VDPELEVSDGATLPTRG 100 Lambda K H 0.326 0.139 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22766716098 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40