bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_2054_orf1 Length=97 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0548 60.1 2e-08 > 5833.PF14_0548 Length=419 Score = 60.1 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 53/84 (63%), Gaps = 0/84 (0%) Query 9 SDERLRTAIRLSNEAAAKDSAGHLPEAFELYKRALENWRVVCKFQQNPTLRERLYRRMDD 68 S+E + A++ + EA +D + EA LY ++L+ + CK+++N +R+ + ++M+ Sbjct 3 SEETINLAVKYAKEAVVEDEKKNYKEALNLYIQSLQYFNFFCKYEKNSNIRDLILKKMEV 62 Query 69 YITRAEQLKQLLRQSSASHLRQRL 92 Y+TRAE LK++L + + ++++ Sbjct 63 YMTRAENLKEMLNKKDSIENKEKI 86 Lambda K H 0.323 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22472223870 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40