bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_2025_orf1 Length=136 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd3_2180 82.4 3e-15 > 5807.cgd3_2180 Length=8243 Score = 82.4 bits (202), Expect = 3e-15, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 8/142 (5%) Query 1 FILTTGHVQATEDDTVTNPIHGGVRGFCRSARLEVENIIGRPVQLGCLDVPAEAAKEPSV 60 F+ T ED + P H G++GF ++AR+E+EN+IG+ + + ++ + +P Sbjct 6568 FVCLTSFNDCKEDGNI--PRHSGIKGFVKTARVELENVIGKSINISHIECNSSLVNDPET 6625 Query 61 IAGIIAQAMPDDESPAEVEICFRNDVQ------YVPRLTRSHVECRGPVELFMGNRGALS 114 + I+ E E EI D+ Y PRL + G ++L M +RGA+ Sbjct 6626 LMRTISYIASIYEGKIEEEITLERDLTISESGIYAPRLESINFPVFGAIKLTMSSRGAIG 6685 Query 115 MLKLRPLPAAARVDPPEGCVEV 136 LK +P P + RV+PP VE+ Sbjct 6686 NLKFKPQPQSERVNPPANTVEI 6707 Lambda K H 0.320 0.139 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22513421946 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40