bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_1796_orf1 Length=208 Score E Sequences producing significant alignments: (Bits) Value 4932.YGR109W-B 117 2e-25 > 4932.YGR109W-B Length=1547 Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 118/240 (49%), Gaps = 42/240 (17%) Query 4 IAKLSAHGWIGPTYSPICAPRIMVDKRDDGTGERQARMVVNYQALNAPTVVPDFPLPPVQ 63 + KL + +I P+ SP +P ++V K+D GT R+ V+Y+ LN T+ FPLP + Sbjct 616 VQKLLDNKFIVPSKSPCSSPVVLVPKKD-GT----FRLCVDYRTLNKATISDPFPLPRID 670 Query 64 TILEMLGGAKYFSTLDLETGFHQIRMAKEDRWKAAFRSVLG------------------- 104 +L +G A+ F+TLDL +G+HQI M +DR+K AF + G Sbjct 671 NLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFA 730 Query 105 ----------------LDDVLIYSADPPTHVVLLRKVLSIFLTNQFYLKFRKRQFARQEL 148 LDD+LI+S P H L VL +K +K +FA +E Sbjct 731 RYMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEET 790 Query 149 TYLGYTISADGIKPAADKIEAIRVWPEVLENETQVRQSLGTVNYCRMLMGPDYADISRPL 208 +LGY+I I P K AIR +P + Q ++ LG +NY R + P+ + I++P+ Sbjct 791 EFLGYSIGIQKIAPLQHKCAAIRDFP-TPKTVKQAQRFLGMINYYRRFI-PNCSKIAQPI 848 Lambda K H 0.322 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 52674479614 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40