bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_1699_orf1 Length=109 Score E Sequences producing significant alignments: (Bits) Value 101510.RHA1_ro06705 140 8e-33 > 101510.RHA1_ro06705 Length=789 Score = 140 bits (354), Expect = 8e-33, Method: Composition-based stats. Identities = 62/96 (64%), Positives = 82/96 (85%), Gaps = 0/96 (0%) Query 1 NLIMLDMVEYQEAHSISRLIGPPPGYMGNDEGGQLTEAVRQKPHSVVLFDEVENAHKNLW 60 N++ LDM EYQE H++SRLIG PPGY+G DEGGQLTEAVR+KP+SVVLFDE+E AH +++ Sbjct 638 NMVRLDMSEYQERHTVSRLIGAPPGYVGYDEGGQLTEAVRRKPYSVVLFDEIEKAHADVF 697 Query 61 SVLLPMLDEGHLSDSKGNRVDFTNCLIILTSNIGQQ 96 + LL +LD+G ++DS+G +VDF N +II+TSNIG Q Sbjct 698 NTLLQVLDDGRITDSQGRQVDFRNTVIIMTSNIGSQ 733 Lambda K H 0.320 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22374500883 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40