bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_1311_orf1 Length=101 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd7_4450 94.7 8e-19 > 5807.cgd7_4450 Length=382 Score = 94.7 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 42/80 (52%), Positives = 60/80 (75%), Gaps = 1/80 (1%) Query 23 SSLDMNEWKKVYSNTQDLRGVAMKWLWDHVDEH-CSFFLMEYEKIEGECTVTYLTSNQLG 81 +S+ M+EWK+VYSNT+DL+GVAM WL+ + D + SF+ M+Y K+ E V + SN +G Sbjct 232 TSMSMDEWKRVYSNTKDLKGVAMPWLYQNFDANGYSFYYMKYNKLPDELDVAFRASNMVG 291 Query 82 GFLQRVDNSMRKDSFAVIDV 101 GFLQR+DN+ RK SF VI++ Sbjct 292 GFLQRLDNNFRKYSFGVINI 311 Lambda K H 0.316 0.126 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22990353331 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40