bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_1288_orf1 Length=113 Score E Sequences producing significant alignments: (Bits) Value 273068.TTE0064 75.1 6e-13 > 273068.TTE0064 Length=287 Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 0/80 (0%) Query 34 AGGTPSASKALQKFMYASIFPTAFIAIIFTGAELFTGNTMTMLICLFERRITFLHLVINW 93 AG P + +LQKF++ ++FP I ++ GAEL TGN MT + F+R+I L+ NW Sbjct 50 AGALPDSFGSLQKFIFGAVFPLGLILVVIAGAELVTGNMMTQPMAYFDRKIDLKGLLKNW 109 Query 94 VGSFFGNWLGALFSAYFLSY 113 + GN++G++F AYFL+Y Sbjct 110 TFVYIGNFIGSVFVAYFLAY 129 Lambda K H 0.335 0.145 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22857864480 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40