bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_1275_orf1 Length=283 Score E Sequences producing significant alignments: (Bits) Value 5833.PF10_0273 230 3e-59 > 5833.PF10_0273 Length=285 Score = 230 bits (587), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 110/274 (40%), Positives = 160/274 (58%), Gaps = 0/274 (0%) Query 6 MERREDQGKRLARFLPMIVICSVMAILYTVYLLYHCLPMFQFEVPPEYRDRGAIAIGALH 65 M+ K + R LP+++I V ++YT+++ ++C+ + Q V +Y + + G Sbjct 1 MKEANAYEKDIRRLLPVMLIGLVTVVMYTIFVTFYCMVLLQINVEKQYVNIDLLNEGYTK 60 Query 66 FFVAHAGMAMVLWSFYKTYSTDPGRIPDTHEWERQPNPSLITERKRDGGARYCHKCSKYK 125 H + +++WSFYKTY +PG IPD +EW+ PN I ER++ G RYC KYK Sbjct 61 LLTFHILLLLLIWSFYKTYKVNPGNIPDNYEWKVDPNIGRIKEREKTGELRYCIHEKKYK 120 Query 126 PDRCHHSSNSGRCVLKMDHYCPWVANDVGFFNYKFFFLTLLYSGATLTFVCSTMAATVSA 185 PDR H+ + VLKMDHYCPWVAN VGF+NYKFF L+L Y+ +V + Sbjct 121 PDRSHYCRAIEKNVLKMDHYCPWVANCVGFYNYKFFLLSLFYANICCLYVNINCYTSFPN 180 Query 186 SIDDSNISFEQVFFTFLGTALSFFMLAIVAPFCIFHCVLITTNCTTIEFCEKRRTGRPNP 245 + NI F +VF+ FL L+ +L I+ PF +FH L + N TT+EFC + + N Sbjct 181 FYSNPNILFNEVFYLFLEIVLASVILIIIFPFFLFHIYLTSKNYTTLEFCVTGQWEKGNI 240 Query 246 YDVGLAENLKQALGDQPLLWPVPVGGPSGDGISF 279 YD+G+ EN KQ LGD LLW P+G P G+G+ + Sbjct 241 YDLGVEENFKQVLGDNILLWIFPLGKPKGNGLFY 274 Lambda K H 0.328 0.141 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 93612100764 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40