bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_1271_orf2 Length=130 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd1_1100 68.9 4e-11 > 5807.cgd1_1100 Length=1103 Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 6/124 (4%) Query 4 DLQMVGSAFLNLFIKAKHCNEISLFAYLEDVDVAAGFSHYVTEAQVLASNR----PSEVR 59 D+++VGS +L+ ++ + ++ YLED+ Y+TE +R Sbjct 940 DIRLVGSVWLHFSVQLLDGYDAPIYVYLEDISPENEI-MYITEGLAQIGHRHVNMTKSAL 998 Query 60 DDLPVGSYGRVLRPFSRKSYKPIEE-DEEVNVSVNFEPTAWTFKKGHSLRLLLTGSDLEN 118 +++P GS +V+RP +R Y+P+ +E + + EP WTF K H L + +TG+D +N Sbjct 999 ENIPHGSARKVIRPLTRSYYQPLRRIGDESPMQITLEPITWTFFKDHRLAISITGADTKN 1058 Query 119 FQLN 122 F+L+ Sbjct 1059 FKLH 1062 Lambda K H 0.318 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23020010250 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40